Hb_004586_040

Information

Type transcription factor
Description TF Family: MIKC
Location Contig4586: 43487-54964
Sequence    

Annotation

kegg
ID tcc:TCM_034501
description K-box region and MADS-box transcription factor family protein
nr
ID XP_007018219.1
description K-box region and MADS-box transcription factor family protein [Theobroma cacao]
swissprot
ID Q9FVC1
description MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1
trembl
ID A0A061FLR3
description K-box region and MADS-box transcription factor family protein OS=Theobroma cacao GN=TCM_034501 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein agl24-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43503: 43484-54976 , PASA_asmbl_43505: 43761-44137
cDNA
(Sanger)
(ID:Location)		 007_K07.ab1: 43531-54465 , 017_J01.ab1: 43531-54449 , 018_B07.ab1: 43531-53843 , 031_O06.ab1: 43484-54232 , 035_E11.ab1: 43541-54499 , 035_K21.ab1: 43484-54027 , 051_N01.ab1: 43533-53860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_040 0.0 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
2 Hb_001488_290 0.1002637584 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_002876_200 0.1144960725 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
4 Hb_003688_010 0.1183914902 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
5 Hb_000544_200 0.1313339679 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
6 Hb_000076_250 0.1425072208 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000483_080 0.1442786711 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
8 Hb_000274_050 0.1446337325 - - Squalene monooxygenase, putative [Ricinus communis]
9 Hb_000077_110 0.145069036 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
10 Hb_000086_180 0.1455266254 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
11 Hb_018133_070 0.1490153486 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
12 Hb_001141_050 0.1490680913 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
13 Hb_007304_030 0.1503496989 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
14 Hb_004730_020 0.1518333122 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
15 Hb_050847_040 0.1522701252 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
16 Hb_001123_310 0.1523530871 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
17 Hb_118283_010 0.1549432314 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000032_410 0.1556291945 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
19 Hb_008511_040 0.1578059124 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_002498_240 0.1588638537 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_040 Hb_004586_040 Hb_001488_290 Hb_001488_290 Hb_004586_040--Hb_001488_290 Hb_002876_200 Hb_002876_200 Hb_004586_040--Hb_002876_200 Hb_003688_010 Hb_003688_010 Hb_004586_040--Hb_003688_010 Hb_000544_200 Hb_000544_200 Hb_004586_040--Hb_000544_200 Hb_000076_250 Hb_000076_250 Hb_004586_040--Hb_000076_250 Hb_000483_080 Hb_000483_080 Hb_004586_040--Hb_000483_080 Hb_001488_290--Hb_002876_200 Hb_000086_180 Hb_000086_180 Hb_001488_290--Hb_000086_180 Hb_050847_040 Hb_050847_040 Hb_001488_290--Hb_050847_040 Hb_002999_030 Hb_002999_030 Hb_001488_290--Hb_002999_030 Hb_001141_050 Hb_001141_050 Hb_001488_290--Hb_001141_050 Hb_002876_200--Hb_050847_040 Hb_000274_050 Hb_000274_050 Hb_002876_200--Hb_000274_050 Hb_005000_010 Hb_005000_010 Hb_002876_200--Hb_005000_010 Hb_002876_200--Hb_000086_180 Hb_003688_010--Hb_000544_200 Hb_118283_010 Hb_118283_010 Hb_003688_010--Hb_118283_010 Hb_000668_060 Hb_000668_060 Hb_003688_010--Hb_000668_060 Hb_003688_010--Hb_001488_290 Hb_012286_060 Hb_012286_060 Hb_003688_010--Hb_012286_060 Hb_000544_200--Hb_118283_010 Hb_000963_050 Hb_000963_050 Hb_000544_200--Hb_000963_050 Hb_000544_200--Hb_002876_200 Hb_000544_200--Hb_000274_050 Hb_000388_080 Hb_000388_080 Hb_000076_250--Hb_000388_080 Hb_003640_050 Hb_003640_050 Hb_000076_250--Hb_003640_050 Hb_000032_410 Hb_000032_410 Hb_000076_250--Hb_000032_410 Hb_000996_080 Hb_000996_080 Hb_000076_250--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000076_250--Hb_003020_250 Hb_000689_050 Hb_000689_050 Hb_000076_250--Hb_000689_050 Hb_001123_310 Hb_001123_310 Hb_000483_080--Hb_001123_310 Hb_000120_300 Hb_000120_300 Hb_000483_080--Hb_000120_300 Hb_000077_110 Hb_000077_110 Hb_000483_080--Hb_000077_110 Hb_004531_080 Hb_004531_080 Hb_000483_080--Hb_004531_080 Hb_002871_130 Hb_002871_130 Hb_000483_080--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_000483_080--Hb_002284_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1091 17.9913 165.269 121.206 25.0647 19.4287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.82192 6.81451 2.21167 27.7026 54.0701

CAGE analysis