Hb_004586_060

Information

Type -
Description -
Location Contig4586: 65594-72101
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10530g
description POPTRDRAFT_816388; clathrin adaptor complexes medium subunit family protein
nr
ID XP_012067988.1
description PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
swissprot
ID Q9SB50
description AP-4 complex subunit mu OS=Arabidopsis thaliana GN=AP4M PE=2 SV=1
trembl
ID A0A067KZ37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15878 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ap-4 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43512: 65707-72058 , PASA_asmbl_43513: 65707-69492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_060 0.0 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
2 Hb_007248_030 0.044232433 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
3 Hb_007062_040 0.0521944959 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
4 Hb_000046_570 0.0539750326 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
5 Hb_001377_310 0.0561162091 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
6 Hb_000702_090 0.0615995543 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
7 Hb_005460_050 0.0622600925 - - COR413-PM2, putative [Ricinus communis]
8 Hb_000513_090 0.0637455969 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
9 Hb_001405_210 0.0637646407 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
10 Hb_000737_030 0.0639789135 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
11 Hb_004109_320 0.0646809607 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
12 Hb_000236_490 0.064898824 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
13 Hb_000313_220 0.0650232301 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
14 Hb_002014_010 0.0668537074 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_012506_030 0.0672767949 - - AP-2 complex subunit alpha, putative [Ricinus communis]
16 Hb_002492_010 0.0674384525 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
17 Hb_000477_050 0.0674681131 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
18 Hb_001856_180 0.0686079492 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
19 Hb_001366_090 0.0688399266 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
20 Hb_000214_050 0.0689458733 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_060 Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_004586_060--Hb_007248_030 Hb_007062_040 Hb_007062_040 Hb_004586_060--Hb_007062_040 Hb_000046_570 Hb_000046_570 Hb_004586_060--Hb_000046_570 Hb_001377_310 Hb_001377_310 Hb_004586_060--Hb_001377_310 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_005460_050 Hb_005460_050 Hb_004586_060--Hb_005460_050 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_001405_210 Hb_001405_210 Hb_007248_030--Hb_001405_210 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_007062_040--Hb_000046_570 Hb_007062_040--Hb_001856_180 Hb_007062_040--Hb_001405_210 Hb_007062_040--Hb_005460_050 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_005460_050--Hb_032990_010 Hb_000933_010 Hb_000933_010 Hb_005460_050--Hb_000933_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_003897_040 Hb_003897_040 Hb_005460_050--Hb_003897_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3734 24.2369 30.0761 28.2999 18.6904 20.9533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2666 17.1297 13.4832 23.5155 17.9759

CAGE analysis