Hb_004586_090

Information

Type -
Description -
Location Contig4586: 102150-110266
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17820g
description POPTRDRAFT_209220; hypothetical protein
nr
ID XP_012067984.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
swissprot
ID Q9SB51
description Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=1 SV=1
trembl
ID A0A067LBH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15876 PE=4 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase 16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43516: 102318-107415 , PASA_asmbl_43517: 107573-110172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_090 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
2 Hb_143629_020 0.0655930947 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
3 Hb_000243_400 0.0704289987 - - PREDICTED: nucleolin-like [Jatropha curcas]
4 Hb_003124_270 0.0725977857 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
5 Hb_005181_050 0.0738624837 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
6 Hb_002078_470 0.075486565 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
7 Hb_000844_050 0.0767074916 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
8 Hb_160608_010 0.0769983449 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
9 Hb_003680_020 0.0781006274 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_014006_010 0.0786682217 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
11 Hb_000007_410 0.0803726201 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
12 Hb_001507_050 0.0839468533 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000015_200 0.0853436352 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
14 Hb_000200_110 0.0875479638 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
15 Hb_003661_010 0.0880581057 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
16 Hb_000167_120 0.0911970896 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
17 Hb_006478_030 0.0912366487 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
18 Hb_013358_060 0.0922477643 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
19 Hb_001414_010 0.0934270106 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
20 Hb_000960_080 0.093746351 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_090 Hb_004586_090 Hb_143629_020 Hb_143629_020 Hb_004586_090--Hb_143629_020 Hb_000243_400 Hb_000243_400 Hb_004586_090--Hb_000243_400 Hb_003124_270 Hb_003124_270 Hb_004586_090--Hb_003124_270 Hb_005181_050 Hb_005181_050 Hb_004586_090--Hb_005181_050 Hb_002078_470 Hb_002078_470 Hb_004586_090--Hb_002078_470 Hb_000844_050 Hb_000844_050 Hb_004586_090--Hb_000844_050 Hb_006794_020 Hb_006794_020 Hb_143629_020--Hb_006794_020 Hb_000428_030 Hb_000428_030 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002809_160 Hb_002809_160 Hb_143629_020--Hb_002809_160 Hb_143629_020--Hb_002078_470 Hb_000133_090 Hb_000133_090 Hb_000243_400--Hb_000133_090 Hb_000200_110 Hb_000200_110 Hb_000243_400--Hb_000200_110 Hb_000413_250 Hb_000413_250 Hb_000243_400--Hb_000413_250 Hb_000243_400--Hb_143629_020 Hb_000243_400--Hb_006794_020 Hb_003124_270--Hb_000844_050 Hb_004884_090 Hb_004884_090 Hb_003124_270--Hb_004884_090 Hb_007012_040 Hb_007012_040 Hb_003124_270--Hb_007012_040 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_005181_050--Hb_000844_050 Hb_005181_050--Hb_000809_250 Hb_002078_470--Hb_000428_030 Hb_013358_060 Hb_013358_060 Hb_002078_470--Hb_013358_060 Hb_002078_470--Hb_003124_270 Hb_004551_020 Hb_004551_020 Hb_002078_470--Hb_004551_020 Hb_048476_080 Hb_048476_080 Hb_000844_050--Hb_048476_080 Hb_003661_010 Hb_003661_010 Hb_000844_050--Hb_003661_010 Hb_000844_050--Hb_003680_020 Hb_000844_050--Hb_000809_250 Hb_001507_050 Hb_001507_050 Hb_000844_050--Hb_001507_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82839 17.0532 12.5758 10.9887 4.66499 4.02333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4492 3.04523 4.62705 15.7668 19.3059

CAGE analysis