Hb_004586_140

Information

Type -
Description -
Location Contig4586: 168075-171506
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10440g
description POPTRDRAFT_830246; hypothetical protein
nr
ID XP_012067972.1
description PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43524: 168233-171455 , PASA_asmbl_43525: 169232-169354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_140 0.0 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
2 Hb_000179_070 0.0505042565 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
3 Hb_012389_020 0.0705351561 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
4 Hb_000302_270 0.0726785664 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
5 Hb_000061_470 0.0732995268 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
6 Hb_000308_030 0.0753988143 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
7 Hb_000521_320 0.0774054452 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
8 Hb_000661_290 0.0802465359 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
9 Hb_000357_110 0.0816905593 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
10 Hb_003125_200 0.0844527783 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
11 Hb_006816_350 0.0846473111 - - PREDICTED: syntaxin-43 [Jatropha curcas]
12 Hb_000868_110 0.0847918116 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
13 Hb_008511_090 0.0861530229 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
14 Hb_010712_030 0.0879603302 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000220_040 0.0893104116 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004310_020 0.0895615992 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
17 Hb_000185_070 0.0897082547 - - conserved hypothetical protein [Ricinus communis]
18 Hb_112798_020 0.0902591792 - - dnajc14 protein, putative [Ricinus communis]
19 Hb_095296_010 0.0903065627 - - PREDICTED: syntaxin-32 [Jatropha curcas]
20 Hb_002872_030 0.0905645722 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_140 Hb_004586_140 Hb_000179_070 Hb_000179_070 Hb_004586_140--Hb_000179_070 Hb_012389_020 Hb_012389_020 Hb_004586_140--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_004586_140--Hb_000302_270 Hb_000061_470 Hb_000061_470 Hb_004586_140--Hb_000061_470 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_000521_320 Hb_000521_320 Hb_004586_140--Hb_000521_320 Hb_006816_350 Hb_006816_350 Hb_000179_070--Hb_006816_350 Hb_003020_270 Hb_003020_270 Hb_000179_070--Hb_003020_270 Hb_000661_290 Hb_000661_290 Hb_000179_070--Hb_000661_290 Hb_095296_010 Hb_095296_010 Hb_000179_070--Hb_095296_010 Hb_000696_090 Hb_000696_090 Hb_000179_070--Hb_000696_090 Hb_002192_080 Hb_002192_080 Hb_012389_020--Hb_002192_080 Hb_003125_200 Hb_003125_200 Hb_012389_020--Hb_003125_200 Hb_004931_070 Hb_004931_070 Hb_012389_020--Hb_004931_070 Hb_012389_020--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_012389_020--Hb_000853_430 Hb_000302_270--Hb_000521_320 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000010_400 Hb_000010_400 Hb_000302_270--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_005137_050 Hb_005137_050 Hb_000061_470--Hb_005137_050 Hb_000407_040 Hb_000407_040 Hb_000061_470--Hb_000407_040 Hb_000061_470--Hb_000179_070 Hb_000878_070 Hb_000878_070 Hb_000061_470--Hb_000878_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_005337_090 Hb_005337_090 Hb_000308_030--Hb_005337_090 Hb_000179_030 Hb_000179_030 Hb_000308_030--Hb_000179_030 Hb_000915_020 Hb_000915_020 Hb_000308_030--Hb_000915_020 Hb_008453_140 Hb_008453_140 Hb_000308_030--Hb_008453_140 Hb_021576_100 Hb_021576_100 Hb_000308_030--Hb_021576_100 Hb_001926_030 Hb_001926_030 Hb_000308_030--Hb_001926_030 Hb_000521_320--Hb_000010_400 Hb_000521_320--Hb_004678_040 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8576 31.1271 23.526 20.6908 23.5756 25.5343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.712 30.885 23.238 15.3673 7.08053

CAGE analysis