Hb_004586_170

Information

Type -
Description -
Location Contig4586: 196715-201255
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011196mg
description hypothetical protein
nr
ID XP_007223960.1
description hypothetical protein PRUPE_ppa011196mg [Prunus persica]
swissprot
ID Q9HJ83
description Chaperone protein DnaJ OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=dnaJ PE=3 SV=1
trembl
ID M5XGT5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011196mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43534: 197173-198339 , PASA_asmbl_43535: 197173-201166
cDNA
(Sanger)
(ID:Location)		 031_D07.ab1: 197173-198199

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_170 0.0 - - hypothetical protein PRUPE_ppa011196mg [Prunus persica]
2 Hb_000788_090 0.092759304 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
3 Hb_001047_230 0.0970836985 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_004306_100 0.0978092237 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
5 Hb_000979_200 0.0979157866 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
6 Hb_000732_130 0.1000209653 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
7 Hb_028486_030 0.1020021186 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
8 Hb_026549_040 0.1080890762 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
9 Hb_000334_210 0.1093885718 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
10 Hb_002454_030 0.1101518207 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
11 Hb_000574_160 0.1109486106 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
12 Hb_001246_060 0.1118866078 - - ATP binding protein, putative [Ricinus communis]
13 Hb_001287_030 0.1121771692 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
14 Hb_000608_370 0.1136281295 - - acyl-carrier-protein [Triadica sebifera]
15 Hb_002397_070 0.1140544818 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_007416_030 0.1145264862 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
17 Hb_004635_100 0.1192371342 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
18 Hb_003656_070 0.1194790993 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
19 Hb_006031_020 0.1195912407 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
20 Hb_002942_190 0.1202131923 - - poly(A) polymerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004586_170 Hb_004586_170 Hb_000788_090 Hb_000788_090 Hb_004586_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_004586_170--Hb_001047_230 Hb_004306_100 Hb_004306_100 Hb_004586_170--Hb_004306_100 Hb_000979_200 Hb_000979_200 Hb_004586_170--Hb_000979_200 Hb_000732_130 Hb_000732_130 Hb_004586_170--Hb_000732_130 Hb_028486_030 Hb_028486_030 Hb_004586_170--Hb_028486_030 Hb_000608_370 Hb_000608_370 Hb_000788_090--Hb_000608_370 Hb_007416_030 Hb_007416_030 Hb_000788_090--Hb_007416_030 Hb_000788_090--Hb_001047_230 Hb_003656_070 Hb_003656_070 Hb_000788_090--Hb_003656_070 Hb_002110_120 Hb_002110_120 Hb_000788_090--Hb_002110_120 Hb_008173_090 Hb_008173_090 Hb_000788_090--Hb_008173_090 Hb_001047_230--Hb_003656_070 Hb_001047_230--Hb_000608_370 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_129204_030 Hb_129204_030 Hb_001047_230--Hb_129204_030 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_001047_230--Hb_007416_030 Hb_004306_100--Hb_000732_130 Hb_002256_020 Hb_002256_020 Hb_004306_100--Hb_002256_020 Hb_004324_370 Hb_004324_370 Hb_004306_100--Hb_004324_370 Hb_000723_080 Hb_000723_080 Hb_004306_100--Hb_000723_080 Hb_001699_130 Hb_001699_130 Hb_004306_100--Hb_001699_130 Hb_003581_100 Hb_003581_100 Hb_000979_200--Hb_003581_100 Hb_000979_200--Hb_028486_030 Hb_001246_060 Hb_001246_060 Hb_000979_200--Hb_001246_060 Hb_026549_040 Hb_026549_040 Hb_000979_200--Hb_026549_040 Hb_012675_050 Hb_012675_050 Hb_000979_200--Hb_012675_050 Hb_011214_020 Hb_011214_020 Hb_000732_130--Hb_011214_020 Hb_000251_130 Hb_000251_130 Hb_000732_130--Hb_000251_130 Hb_000384_100 Hb_000384_100 Hb_000732_130--Hb_000384_100 Hb_008221_140 Hb_008221_140 Hb_000732_130--Hb_008221_140 Hb_002878_020 Hb_002878_020 Hb_000732_130--Hb_002878_020 Hb_000680_140 Hb_000680_140 Hb_028486_030--Hb_000680_140 Hb_000962_040 Hb_000962_040 Hb_028486_030--Hb_000962_040 Hb_004846_090 Hb_004846_090 Hb_028486_030--Hb_004846_090 Hb_007220_010 Hb_007220_010 Hb_028486_030--Hb_007220_010 Hb_028486_030--Hb_026549_040 Hb_028486_030--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2732 24.6927 12.6041 9.43761 28.0387 22.851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6988 78.6871 43.2058 10.4691 25.2182

CAGE analysis