Hb_004586_190

Information

Type -
Description -
Location Contig4586: 206347-209187
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10390g
description POPTRDRAFT_643847; copper-binding family protein
nr
ID XP_012067967.1
description PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
swissprot
ID P93009
description Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1
trembl
ID A0A067L2J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15865 PE=4 SV=1
Gene Ontology
ID GO:0050896
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43539: 206379-208946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_190 0.0 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
2 Hb_000172_400 0.1005146455 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_003638_030 0.1021688133 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
4 Hb_002207_100 0.1071269492 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
5 Hb_002007_270 0.1089954701 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
6 Hb_000371_110 0.1119977569 - - -
7 Hb_026048_100 0.114899296 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
8 Hb_001514_200 0.1157509014 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
9 Hb_005839_120 0.1197529716 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_005078_040 0.1203572339 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
11 Hb_066807_010 0.1208644359 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
12 Hb_001804_060 0.1227618568 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
13 Hb_000608_120 0.1239090754 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
14 Hb_001817_180 0.1250606141 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
15 Hb_010315_050 0.1291825886 - - hypothetical protein JCGZ_25247 [Jatropha curcas]
16 Hb_002662_100 0.1297776765 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
17 Hb_000035_380 0.131352024 - - -
18 Hb_000463_040 0.1317975184 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
19 Hb_000138_040 0.132186966 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
20 Hb_025557_010 0.1321938252 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_004586_190 Hb_004586_190 Hb_000172_400 Hb_000172_400 Hb_004586_190--Hb_000172_400 Hb_003638_030 Hb_003638_030 Hb_004586_190--Hb_003638_030 Hb_002207_100 Hb_002207_100 Hb_004586_190--Hb_002207_100 Hb_002007_270 Hb_002007_270 Hb_004586_190--Hb_002007_270 Hb_000371_110 Hb_000371_110 Hb_004586_190--Hb_000371_110 Hb_026048_100 Hb_026048_100 Hb_004586_190--Hb_026048_100 Hb_000172_400--Hb_002207_100 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_001454_060 Hb_001454_060 Hb_000172_400--Hb_001454_060 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_000172_400--Hb_003638_030 Hb_003638_030--Hb_002207_100 Hb_000805_090 Hb_000805_090 Hb_003638_030--Hb_000805_090 Hb_003638_030--Hb_026048_100 Hb_162275_010 Hb_162275_010 Hb_003638_030--Hb_162275_010 Hb_000700_090 Hb_000700_090 Hb_003638_030--Hb_000700_090 Hb_098709_010 Hb_098709_010 Hb_002207_100--Hb_098709_010 Hb_033491_010 Hb_033491_010 Hb_002207_100--Hb_033491_010 Hb_000365_360 Hb_000365_360 Hb_002207_100--Hb_000365_360 Hb_000035_380 Hb_000035_380 Hb_002207_100--Hb_000035_380 Hb_004852_030 Hb_004852_030 Hb_002007_270--Hb_004852_030 Hb_001538_010 Hb_001538_010 Hb_002007_270--Hb_001538_010 Hb_002007_270--Hb_026048_100 Hb_000622_310 Hb_000622_310 Hb_002007_270--Hb_000622_310 Hb_003297_030 Hb_003297_030 Hb_002007_270--Hb_003297_030 Hb_002007_270--Hb_000172_400 Hb_001433_170 Hb_001433_170 Hb_000371_110--Hb_001433_170 Hb_000117_040 Hb_000117_040 Hb_000371_110--Hb_000117_040 Hb_001186_060 Hb_001186_060 Hb_000371_110--Hb_001186_060 Hb_000163_290 Hb_000163_290 Hb_000371_110--Hb_000163_290 Hb_006499_010 Hb_006499_010 Hb_000371_110--Hb_006499_010 Hb_000138_040 Hb_000138_040 Hb_000371_110--Hb_000138_040 Hb_066807_010 Hb_066807_010 Hb_026048_100--Hb_066807_010 Hb_006602_020 Hb_006602_020 Hb_026048_100--Hb_006602_020 Hb_026048_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_026048_100--Hb_000057_060 Hb_026048_100--Hb_000172_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.2807 26.639 4.65699 1.89096 59.0491 70.0074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7348 50.9097 46.0691 12.3528 2.2287

CAGE analysis