Hb_004586_200

Information

Type -
Description -
Location Contig4586: 217334-219726
Sequence    

Annotation

kegg
ID rcu:RCOM_1039070
description cyclin d, putative
nr
ID XP_012067966.1
description PREDICTED: cyclin-D3-1-like [Jatropha curcas]
swissprot
ID Q69QB8
description Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2
trembl
ID A0A067KZ51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15864 PE=3 SV=1
Gene Ontology
ID GO:0005634
description d2 4-type cyclin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43541: 218875-219307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_200 0.0 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
2 Hb_002284_270 0.2378856305 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
3 Hb_001435_020 0.2413363679 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
4 Hb_005725_260 0.2446918284 - - squalene monooxygenase [Jatropha curcas]
5 Hb_001790_030 0.2594238535 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
6 Hb_000788_020 0.2695855427 - - PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]
7 Hb_011386_030 0.2739448414 - - PREDICTED: probable protein phosphatase 2C 26 [Jatropha curcas]
8 Hb_000796_170 0.2786424186 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
9 Hb_088500_010 0.2803628852 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
10 Hb_000176_150 0.2819855389 - - PREDICTED: lactation elevated protein 1 isoform X2 [Jatropha curcas]
11 Hb_003666_040 0.2821110963 - - PREDICTED: uncharacterized protein LOC105639624 [Jatropha curcas]
12 Hb_128196_020 0.2829839039 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
13 Hb_000622_240 0.284822912 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
14 Hb_000110_230 0.2887108342 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
15 Hb_004545_010 0.2891590928 - - acyl carrier protein [Ricinus communis]
16 Hb_009178_070 0.2892807029 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
17 Hb_003929_100 0.2918142265 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Populus euphratica]
18 Hb_002150_130 0.294431081 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
19 Hb_161207_010 0.2956024712 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
20 Hb_000254_140 0.2957286301 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004586_200 Hb_004586_200 Hb_002284_270 Hb_002284_270 Hb_004586_200--Hb_002284_270 Hb_001435_020 Hb_001435_020 Hb_004586_200--Hb_001435_020 Hb_005725_260 Hb_005725_260 Hb_004586_200--Hb_005725_260 Hb_001790_030 Hb_001790_030 Hb_004586_200--Hb_001790_030 Hb_000788_020 Hb_000788_020 Hb_004586_200--Hb_000788_020 Hb_011386_030 Hb_011386_030 Hb_004586_200--Hb_011386_030 Hb_011310_180 Hb_011310_180 Hb_002284_270--Hb_011310_180 Hb_001842_020 Hb_001842_020 Hb_002284_270--Hb_001842_020 Hb_004545_010 Hb_004545_010 Hb_002284_270--Hb_004545_010 Hb_003935_070 Hb_003935_070 Hb_002284_270--Hb_003935_070 Hb_000032_140 Hb_000032_140 Hb_002284_270--Hb_000032_140 Hb_126917_010 Hb_126917_010 Hb_002284_270--Hb_126917_010 Hb_000622_240 Hb_000622_240 Hb_001435_020--Hb_000622_240 Hb_003349_030 Hb_003349_030 Hb_001435_020--Hb_003349_030 Hb_001712_020 Hb_001712_020 Hb_001435_020--Hb_001712_020 Hb_001435_020--Hb_001790_030 Hb_005846_030 Hb_005846_030 Hb_001435_020--Hb_005846_030 Hb_000390_110 Hb_000390_110 Hb_001435_020--Hb_000390_110 Hb_001401_080 Hb_001401_080 Hb_005725_260--Hb_001401_080 Hb_000441_060 Hb_000441_060 Hb_005725_260--Hb_000441_060 Hb_000172_380 Hb_000172_380 Hb_005725_260--Hb_000172_380 Hb_000796_170 Hb_000796_170 Hb_005725_260--Hb_000796_170 Hb_000028_110 Hb_000028_110 Hb_005725_260--Hb_000028_110 Hb_005725_260--Hb_001435_020 Hb_003813_020 Hb_003813_020 Hb_001790_030--Hb_003813_020 Hb_000984_240 Hb_000984_240 Hb_001790_030--Hb_000984_240 Hb_001790_030--Hb_003349_030 Hb_001790_030--Hb_005846_030 Hb_001790_030--Hb_001712_020 Hb_000254_140 Hb_000254_140 Hb_001790_030--Hb_000254_140 Hb_055619_010 Hb_055619_010 Hb_000788_020--Hb_055619_010 Hb_002811_010 Hb_002811_010 Hb_000788_020--Hb_002811_010 Hb_012627_040 Hb_012627_040 Hb_000788_020--Hb_012627_040 Hb_000120_290 Hb_000120_290 Hb_000788_020--Hb_000120_290 Hb_007534_050 Hb_007534_050 Hb_000788_020--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_000788_020--Hb_005731_160 Hb_016219_030 Hb_016219_030 Hb_011386_030--Hb_016219_030 Hb_048093_010 Hb_048093_010 Hb_011386_030--Hb_048093_010 Hb_001105_040 Hb_001105_040 Hb_011386_030--Hb_001105_040 Hb_000480_040 Hb_000480_040 Hb_011386_030--Hb_000480_040 Hb_025194_050 Hb_025194_050 Hb_011386_030--Hb_025194_050 Hb_000108_020 Hb_000108_020 Hb_011386_030--Hb_000108_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122524 0 0.492619 0.71845 0.29109 0.0884064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26142 0.330722 0 0.177062 1.35927

CAGE analysis