Hb_004586_230

Information

Type -
Description -
Location Contig4586: 261949-263006
Sequence    

Annotation

kegg
ID rcu:RCOM_1038840
description hypothetical protein
nr
ID XP_002514011.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1038840 PE=4 SV=1
Gene Ontology
ID GO:0008270
description myb-like protein h isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43548: 262045-262303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012395_260 0.0834905678 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
3 Hb_000702_040 0.101619026 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
4 Hb_000365_190 0.1079921186 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
5 Hb_001587_220 0.1089858113 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_006573_060 0.1154420108 - - hypothetical protein [Bruguiera gymnorhiza]
7 Hb_001195_650 0.1161746714 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
8 Hb_000604_050 0.1264930821 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
9 Hb_103149_010 0.1282804896 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
10 Hb_011101_010 0.1304935935 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
11 Hb_000732_100 0.1317482461 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
12 Hb_000742_260 0.1332357722 - - hypothetical protein RCOM_1336320 [Ricinus communis]
13 Hb_005687_060 0.1333409516 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
14 Hb_020301_010 0.1350610816 - - cytochrome P450, putative [Ricinus communis]
15 Hb_015884_010 0.1372888461 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
16 Hb_005892_010 0.1390254571 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
17 Hb_010267_030 0.1420270973 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
18 Hb_004282_040 0.1423373447 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
19 Hb_009476_160 0.142558595 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
20 Hb_005389_090 0.142892954 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]

Gene co-expression network

sample Hb_004586_230 Hb_004586_230 Hb_012395_260 Hb_012395_260 Hb_004586_230--Hb_012395_260 Hb_000702_040 Hb_000702_040 Hb_004586_230--Hb_000702_040 Hb_000365_190 Hb_000365_190 Hb_004586_230--Hb_000365_190 Hb_001587_220 Hb_001587_220 Hb_004586_230--Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_004586_230--Hb_006573_060 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650 Hb_004659_110 Hb_004659_110 Hb_012395_260--Hb_004659_110 Hb_000201_070 Hb_000201_070 Hb_012395_260--Hb_000201_070 Hb_000604_050 Hb_000604_050 Hb_012395_260--Hb_000604_050 Hb_002025_120 Hb_002025_120 Hb_012395_260--Hb_002025_120 Hb_012395_260--Hb_000702_040 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_000702_040--Hb_001587_220 Hb_002639_120 Hb_002639_120 Hb_000702_040--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_000702_040--Hb_006890_050 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010 Hb_113396_010 Hb_113396_010 Hb_000365_190--Hb_113396_010 Hb_026048_030 Hb_026048_030 Hb_000365_190--Hb_026048_030 Hb_000742_260 Hb_000742_260 Hb_000365_190--Hb_000742_260 Hb_001310_080 Hb_001310_080 Hb_000365_190--Hb_001310_080 Hb_011101_010 Hb_011101_010 Hb_000365_190--Hb_011101_010 Hb_001587_220--Hb_006573_060 Hb_001587_220--Hb_005892_010 Hb_001587_220--Hb_011101_010 Hb_000137_030 Hb_000137_030 Hb_001587_220--Hb_000137_030 Hb_005389_090 Hb_005389_090 Hb_006573_060--Hb_005389_090 Hb_000991_110 Hb_000991_110 Hb_006573_060--Hb_000991_110 Hb_006573_060--Hb_000702_040 Hb_003939_090 Hb_003939_090 Hb_006573_060--Hb_003939_090 Hb_027905_010 Hb_027905_010 Hb_001195_650--Hb_027905_010 Hb_003209_040 Hb_003209_040 Hb_001195_650--Hb_003209_040 Hb_000983_110 Hb_000983_110 Hb_001195_650--Hb_000983_110 Hb_000777_020 Hb_000777_020 Hb_001195_650--Hb_000777_020 Hb_004241_200 Hb_004241_200 Hb_001195_650--Hb_004241_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.493228 36.7966 6.92379 36.293 0.555305 0.517261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11028 0.130093 0 4.05277 5.38416

CAGE analysis