Hb_004586_240

Information

Type -
Description -
Location Contig4586: 271162-272682
Sequence    

Annotation

kegg
ID rcu:RCOM_1038730
description protein with unknown function
nr
ID XP_012067958.1
description PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
swissprot
ID Q9SGN7
description Serine/threonine-protein kinase-like protein At1g28390 OS=Arabidopsis thaliana GN=At1g28390 PE=2 SV=1
trembl
ID A0A067L2I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15860 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein at1g28390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_240 0.0 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
2 Hb_005504_030 0.0810927144 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
3 Hb_000009_140 0.0884616743 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
4 Hb_001856_170 0.1015886264 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
5 Hb_000120_310 0.1159595852 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
6 Hb_001369_160 0.1262945182 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
7 Hb_001596_020 0.1268237654 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
8 Hb_006831_080 0.1285302594 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
9 Hb_019863_030 0.129571183 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
10 Hb_033363_010 0.1328525121 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
11 Hb_000840_070 0.1336364296 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_002781_010 0.1375491627 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
13 Hb_001675_010 0.1403295657 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
14 Hb_009646_010 0.1474504464 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
15 Hb_002471_140 0.1480675695 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
16 Hb_003894_100 0.150433066 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
17 Hb_000953_040 0.1507159254 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
18 Hb_000363_410 0.1510413431 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
19 Hb_002662_090 0.1512774607 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
20 Hb_000072_020 0.1517616596 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_240 Hb_004586_240 Hb_005504_030 Hb_005504_030 Hb_004586_240--Hb_005504_030 Hb_000009_140 Hb_000009_140 Hb_004586_240--Hb_000009_140 Hb_001856_170 Hb_001856_170 Hb_004586_240--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_004586_240--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_004586_240--Hb_001369_160 Hb_001596_020 Hb_001596_020 Hb_004586_240--Hb_001596_020 Hb_005504_030--Hb_000009_140 Hb_033363_010 Hb_033363_010 Hb_005504_030--Hb_033363_010 Hb_000258_090 Hb_000258_090 Hb_005504_030--Hb_000258_090 Hb_000072_020 Hb_000072_020 Hb_005504_030--Hb_000072_020 Hb_010068_070 Hb_010068_070 Hb_005504_030--Hb_010068_070 Hb_000009_140--Hb_033363_010 Hb_000009_140--Hb_000072_020 Hb_009646_010 Hb_009646_010 Hb_000009_140--Hb_009646_010 Hb_000009_140--Hb_010068_070 Hb_001856_170--Hb_000120_310 Hb_001856_170--Hb_001369_160 Hb_006831_080 Hb_006831_080 Hb_001856_170--Hb_006831_080 Hb_001856_170--Hb_001596_020 Hb_001856_170--Hb_000009_140 Hb_000120_310--Hb_001369_160 Hb_001488_280 Hb_001488_280 Hb_000120_310--Hb_001488_280 Hb_000120_310--Hb_001596_020 Hb_002833_020 Hb_002833_020 Hb_000120_310--Hb_002833_020 Hb_002662_090 Hb_002662_090 Hb_001369_160--Hb_002662_090 Hb_001369_160--Hb_001596_020 Hb_002447_150 Hb_002447_150 Hb_001369_160--Hb_002447_150 Hb_003894_100 Hb_003894_100 Hb_001369_160--Hb_003894_100 Hb_001596_020--Hb_006831_080 Hb_001178_080 Hb_001178_080 Hb_001596_020--Hb_001178_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82874 6.22725 4.66693 5.22601 0.645033 0.712902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.706874 1.06388 0.49997 7.10206 1.67024

CAGE analysis