Hb_004586_270

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig4586: 317320-318105
Sequence    

Annotation

kegg
ID tcc:TCM_034470
description Transcription factor, putative
nr
ID XP_012067956.1
description PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9SB61
description Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1
trembl
ID A0A067KZ47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15859 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43552: 317292-318586 , PASA_asmbl_43553: 317958-318586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_270 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
2 Hb_008112_020 0.129559484 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
3 Hb_000227_100 0.13341914 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
4 Hb_169383_010 0.1337813405 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
5 Hb_001195_290 0.1465940222 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
6 Hb_003090_240 0.1512772546 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
7 Hb_006472_040 0.1547477088 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
8 Hb_002681_210 0.1558432249 - - PREDICTED: uncharacterized protein LOC105633686 [Jatropha curcas]
9 Hb_000190_230 0.1578532734 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
10 Hb_002387_010 0.1584915374 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
11 Hb_011282_040 0.158559994 - - Sec14 cytosolic factor, putative [Ricinus communis]
12 Hb_019654_180 0.1585689964 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
13 Hb_002805_280 0.1605935067 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
14 Hb_000590_110 0.1609024851 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001268_170 0.163480081 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
16 Hb_000684_400 0.1639372225 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
17 Hb_000200_360 0.1678148377 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
18 Hb_000264_050 0.1686562376 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
19 Hb_022137_050 0.1700948354 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
20 Hb_022693_010 0.1703834325 - - pectin acetylesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004586_270 Hb_004586_270 Hb_008112_020 Hb_008112_020 Hb_004586_270--Hb_008112_020 Hb_000227_100 Hb_000227_100 Hb_004586_270--Hb_000227_100 Hb_169383_010 Hb_169383_010 Hb_004586_270--Hb_169383_010 Hb_001195_290 Hb_001195_290 Hb_004586_270--Hb_001195_290 Hb_003090_240 Hb_003090_240 Hb_004586_270--Hb_003090_240 Hb_006472_040 Hb_006472_040 Hb_004586_270--Hb_006472_040 Hb_008112_020--Hb_006472_040 Hb_008112_020--Hb_001195_290 Hb_022693_010 Hb_022693_010 Hb_008112_020--Hb_022693_010 Hb_004979_050 Hb_004979_050 Hb_008112_020--Hb_004979_050 Hb_000679_320 Hb_000679_320 Hb_008112_020--Hb_000679_320 Hb_008112_020--Hb_169383_010 Hb_012760_120 Hb_012760_120 Hb_000227_100--Hb_012760_120 Hb_000227_100--Hb_008112_020 Hb_000227_100--Hb_004979_050 Hb_000227_100--Hb_003090_240 Hb_001959_100 Hb_001959_100 Hb_000227_100--Hb_001959_100 Hb_000684_400 Hb_000684_400 Hb_000227_100--Hb_000684_400 Hb_169383_010--Hb_006472_040 Hb_004096_210 Hb_004096_210 Hb_169383_010--Hb_004096_210 Hb_169383_010--Hb_001195_290 Hb_019654_180 Hb_019654_180 Hb_169383_010--Hb_019654_180 Hb_000618_110 Hb_000618_110 Hb_169383_010--Hb_000618_110 Hb_001195_290--Hb_006472_040 Hb_001517_010 Hb_001517_010 Hb_001195_290--Hb_001517_010 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_002805_280 Hb_002805_280 Hb_003090_240--Hb_002805_280 Hb_002387_010 Hb_002387_010 Hb_003090_240--Hb_002387_010 Hb_002042_210 Hb_002042_210 Hb_003090_240--Hb_002042_210 Hb_000739_280 Hb_000739_280 Hb_003090_240--Hb_000739_280 Hb_008195_090 Hb_008195_090 Hb_003090_240--Hb_008195_090 Hb_006291_050 Hb_006291_050 Hb_003090_240--Hb_006291_050 Hb_006472_040--Hb_000679_320 Hb_000317_180 Hb_000317_180 Hb_006472_040--Hb_000317_180 Hb_009393_140 Hb_009393_140 Hb_006472_040--Hb_009393_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.345596 0.0303286 3.89002 4.58349 0.0864568 0.073381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.345453 0.488921 0.0981059 0.0880085 10.1235

CAGE analysis