Hb_004586_280

Information

Type -
Description -
Location Contig4586: 322411-325873
Sequence    

Annotation

kegg
ID tcc:TCM_034468
description FH interacting protein 1
nr
ID XP_012067954.1
description PREDICTED: GEM-like protein 1 [Jatropha curcas]
swissprot
ID Q9SE96
description GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1
trembl
ID A0A067KZ21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15858 PE=4 SV=1
Gene Ontology
ID GO:0005622
description gem-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43557: 322404-324185 , PASA_asmbl_43558: 325151-325684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_280 0.0 - - PREDICTED: GEM-like protein 1 [Jatropha curcas]
2 Hb_167234_010 0.1237148853 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
3 Hb_004994_090 0.1287291144 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
4 Hb_001235_140 0.129890031 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
5 Hb_162150_010 0.1342449728 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000213_120 0.135147169 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_003097_170 0.1352557829 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
8 Hb_106552_020 0.1367540001 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
9 Hb_003498_120 0.1375135295 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
10 Hb_012539_110 0.1377445869 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
11 Hb_002232_320 0.1380558908 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000236_400 0.1385128119 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
13 Hb_000648_080 0.1394851456 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
14 Hb_007657_020 0.13989133 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
15 Hb_002374_010 0.1402566906 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
16 Hb_007123_030 0.1403470835 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
17 Hb_000862_040 0.1411681452 - - ara4-interacting protein, putative [Ricinus communis]
18 Hb_000126_010 0.141500433 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
19 Hb_002890_120 0.1425016872 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
20 Hb_000163_220 0.1446439355 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]

Gene co-expression network

sample Hb_004586_280 Hb_004586_280 Hb_167234_010 Hb_167234_010 Hb_004586_280--Hb_167234_010 Hb_004994_090 Hb_004994_090 Hb_004586_280--Hb_004994_090 Hb_001235_140 Hb_001235_140 Hb_004586_280--Hb_001235_140 Hb_162150_010 Hb_162150_010 Hb_004586_280--Hb_162150_010 Hb_000213_120 Hb_000213_120 Hb_004586_280--Hb_000213_120 Hb_003097_170 Hb_003097_170 Hb_004586_280--Hb_003097_170 Hb_003211_010 Hb_003211_010 Hb_167234_010--Hb_003211_010 Hb_118026_010 Hb_118026_010 Hb_167234_010--Hb_118026_010 Hb_030736_070 Hb_030736_070 Hb_167234_010--Hb_030736_070 Hb_056987_010 Hb_056987_010 Hb_167234_010--Hb_056987_010 Hb_001055_030 Hb_001055_030 Hb_167234_010--Hb_001055_030 Hb_000009_330 Hb_000009_330 Hb_004994_090--Hb_000009_330 Hb_000059_020 Hb_000059_020 Hb_004994_090--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_004994_090--Hb_001935_140 Hb_000302_200 Hb_000302_200 Hb_004994_090--Hb_000302_200 Hb_000406_110 Hb_000406_110 Hb_004994_090--Hb_000406_110 Hb_008948_140 Hb_008948_140 Hb_004994_090--Hb_008948_140 Hb_010053_030 Hb_010053_030 Hb_001235_140--Hb_010053_030 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000505_020 Hb_000505_020 Hb_001235_140--Hb_000505_020 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_162150_010--Hb_004994_090 Hb_005489_140 Hb_005489_140 Hb_162150_010--Hb_005489_140 Hb_049436_010 Hb_049436_010 Hb_162150_010--Hb_049436_010 Hb_002344_060 Hb_002344_060 Hb_162150_010--Hb_002344_060 Hb_062416_010 Hb_062416_010 Hb_162150_010--Hb_062416_010 Hb_002874_090 Hb_002874_090 Hb_162150_010--Hb_002874_090 Hb_032808_030 Hb_032808_030 Hb_000213_120--Hb_032808_030 Hb_000925_140 Hb_000925_140 Hb_000213_120--Hb_000925_140 Hb_000369_130 Hb_000369_130 Hb_000213_120--Hb_000369_130 Hb_001123_050 Hb_001123_050 Hb_000213_120--Hb_001123_050 Hb_000862_040 Hb_000862_040 Hb_000213_120--Hb_000862_040 Hb_002662_020 Hb_002662_020 Hb_000213_120--Hb_002662_020 Hb_004235_080 Hb_004235_080 Hb_003097_170--Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_003097_170--Hb_000923_080 Hb_000221_250 Hb_000221_250 Hb_003097_170--Hb_000221_250 Hb_000020_150 Hb_000020_150 Hb_003097_170--Hb_000020_150 Hb_004429_100 Hb_004429_100 Hb_003097_170--Hb_004429_100 Hb_001030_110 Hb_001030_110 Hb_003097_170--Hb_001030_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72448 3.28628 1.9267 2.21999 2.02064 2.91547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44819 1.72163 0.272414 3.5488 0.970119

CAGE analysis