Hb_004586_300

Information

Type -
Description -
Location Contig4586: 341721-351484
Sequence    

Annotation

kegg
ID rcu:RCOM_1038570
description pyridoxamine 5-phosphate oxidase, putative (EC:1.4.3.5)
nr
ID XP_012067952.1
description PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LTX3
description Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=PPOX1 PE=1 SV=1
trembl
ID A0A067LBF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15856 PE=3 SV=1
Gene Ontology
ID GO:0005829
description pyridoxine pyridoxamine 5 -phosphate oxidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43563: 343097-351569 , PASA_asmbl_43564: 343022-351569 , PASA_asmbl_43565: 349265-351389
cDNA
(Sanger)
(ID:Location)		 028_I13.ab1: 349214-351569 , 028_P21.ab1: 349188-351569

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_300 0.0 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
2 Hb_006059_040 0.0777109778 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
3 Hb_002232_410 0.0833008646 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
4 Hb_000069_380 0.0847375316 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
5 Hb_002445_060 0.0865334733 - - arf gtpase-activating protein, putative [Ricinus communis]
6 Hb_001221_110 0.0882829919 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
7 Hb_000120_170 0.090835404 - - selenoprotein [Populus trichocarpa]
8 Hb_002205_110 0.0913803511 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000649_110 0.0928281552 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
10 Hb_007811_050 0.0934397005 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
11 Hb_000331_680 0.0939723616 - - Protein bem46, putative [Ricinus communis]
12 Hb_000886_050 0.0945965757 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
13 Hb_000028_370 0.0968865131 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
14 Hb_002234_180 0.0974203687 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001359_050 0.0982829289 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000930_030 0.0987591889 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
17 Hb_000878_070 0.1005968628 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
18 Hb_004117_110 0.1009346838 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
19 Hb_002820_030 0.1017055916 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
20 Hb_008725_230 0.102533037 - - PREDICTED: CTP synthase [Jatropha curcas]

Gene co-expression network

sample Hb_004586_300 Hb_004586_300 Hb_006059_040 Hb_006059_040 Hb_004586_300--Hb_006059_040 Hb_002232_410 Hb_002232_410 Hb_004586_300--Hb_002232_410 Hb_000069_380 Hb_000069_380 Hb_004586_300--Hb_000069_380 Hb_002445_060 Hb_002445_060 Hb_004586_300--Hb_002445_060 Hb_001221_110 Hb_001221_110 Hb_004586_300--Hb_001221_110 Hb_000120_170 Hb_000120_170 Hb_004586_300--Hb_000120_170 Hb_006059_040--Hb_000069_380 Hb_000708_030 Hb_000708_030 Hb_006059_040--Hb_000708_030 Hb_005730_040 Hb_005730_040 Hb_006059_040--Hb_005730_040 Hb_007472_070 Hb_007472_070 Hb_006059_040--Hb_007472_070 Hb_000976_140 Hb_000976_140 Hb_006059_040--Hb_000976_140 Hb_006570_080 Hb_006570_080 Hb_006059_040--Hb_006570_080 Hb_008725_230 Hb_008725_230 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_002232_410--Hb_000732_010 Hb_005271_220 Hb_005271_220 Hb_002232_410--Hb_005271_220 Hb_000028_370 Hb_000028_370 Hb_002232_410--Hb_000028_370 Hb_000069_380--Hb_000708_030 Hb_000699_030 Hb_000699_030 Hb_000069_380--Hb_000699_030 Hb_001225_040 Hb_001225_040 Hb_000069_380--Hb_001225_040 Hb_010368_010 Hb_010368_010 Hb_000069_380--Hb_010368_010 Hb_001699_220 Hb_001699_220 Hb_000069_380--Hb_001699_220 Hb_000215_300 Hb_000215_300 Hb_002445_060--Hb_000215_300 Hb_002445_060--Hb_006059_040 Hb_000140_290 Hb_000140_290 Hb_002445_060--Hb_000140_290 Hb_006588_170 Hb_006588_170 Hb_002445_060--Hb_006588_170 Hb_004705_170 Hb_004705_170 Hb_002445_060--Hb_004705_170 Hb_003177_020 Hb_003177_020 Hb_002445_060--Hb_003177_020 Hb_001359_050 Hb_001359_050 Hb_001221_110--Hb_001359_050 Hb_000649_110 Hb_000649_110 Hb_001221_110--Hb_000649_110 Hb_000484_130 Hb_000484_130 Hb_001221_110--Hb_000484_130 Hb_000173_280 Hb_000173_280 Hb_001221_110--Hb_000173_280 Hb_164390_010 Hb_164390_010 Hb_001221_110--Hb_164390_010 Hb_024958_010 Hb_024958_010 Hb_001221_110--Hb_024958_010 Hb_003549_150 Hb_003549_150 Hb_000120_170--Hb_003549_150 Hb_013738_020 Hb_013738_020 Hb_000120_170--Hb_013738_020 Hb_000076_160 Hb_000076_160 Hb_000120_170--Hb_000076_160 Hb_000227_090 Hb_000227_090 Hb_000120_170--Hb_000227_090 Hb_000928_220 Hb_000928_220 Hb_000120_170--Hb_000928_220 Hb_000009_400 Hb_000009_400 Hb_000120_170--Hb_000009_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49067 8.62654 7.6687 7.54734 4.25483 5.53235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1123 5.13794 4.62815 5.82102 4.11552

CAGE analysis