Hb_004586_310

Information

Type -
Description -
Location Contig4586: 353635-355232
Sequence    

Annotation

kegg
ID rcu:RCOM_1038560
description hypothetical protein
nr
ID XP_002514003.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7QBJ0
description UPF0483 protein AGAP003155 OS=Anopheles gambiae GN=AGAP003155 PE=3 SV=3
trembl
ID B9RJT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1038560 PE=4 SV=1
Gene Ontology
ID GO:0009611
description folic acid and derivative biosynthetic process

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43566: 353609-355207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005686_100 0.1237175806 - - conserved hypothetical protein [Ricinus communis]
3 Hb_114292_010 0.1438721164 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005694_070 0.1713294819 - - kinase, putative [Ricinus communis]
5 Hb_001007_090 0.1759755955 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
6 Hb_001143_200 0.1804481605 transcription factor TF Family: NAC NAC domain protein [Glycine max]
7 Hb_002221_010 0.1810679492 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
8 Hb_002307_040 0.1883490718 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000521_190 0.1884873191 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
10 Hb_001935_040 0.1887388768 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
11 Hb_002218_050 0.1917159846 - - SSXT family protein isoform 2, partial [Theobroma cacao]
12 Hb_000042_020 0.1943382278 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_116420_050 0.2003352166 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
14 Hb_000388_040 0.2028484311 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
15 Hb_000069_250 0.2046682372 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
16 Hb_000115_190 0.2069649115 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
17 Hb_000215_150 0.2096732038 - - PREDICTED: uncharacterized protein LOC100249186 [Vitis vinifera]
18 Hb_003787_050 0.2096773452 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008878_010 0.213618057 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
20 Hb_176472_020 0.214177906 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004586_310 Hb_004586_310 Hb_005686_100 Hb_005686_100 Hb_004586_310--Hb_005686_100 Hb_114292_010 Hb_114292_010 Hb_004586_310--Hb_114292_010 Hb_005694_070 Hb_005694_070 Hb_004586_310--Hb_005694_070 Hb_001007_090 Hb_001007_090 Hb_004586_310--Hb_001007_090 Hb_001143_200 Hb_001143_200 Hb_004586_310--Hb_001143_200 Hb_002221_010 Hb_002221_010 Hb_004586_310--Hb_002221_010 Hb_005686_100--Hb_005694_070 Hb_002307_040 Hb_002307_040 Hb_005686_100--Hb_002307_040 Hb_000069_250 Hb_000069_250 Hb_005686_100--Hb_000069_250 Hb_005686_100--Hb_114292_010 Hb_003762_010 Hb_003762_010 Hb_005686_100--Hb_003762_010 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_000142_030 Hb_000142_030 Hb_114292_010--Hb_000142_030 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_000115_190 Hb_000115_190 Hb_114292_010--Hb_000115_190 Hb_000347_160 Hb_000347_160 Hb_114292_010--Hb_000347_160 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_005694_070--Hb_001007_090 Hb_000521_190 Hb_000521_190 Hb_005694_070--Hb_000521_190 Hb_123475_020 Hb_123475_020 Hb_005694_070--Hb_123475_020 Hb_059481_010 Hb_059481_010 Hb_005694_070--Hb_059481_010 Hb_008878_010 Hb_008878_010 Hb_001007_090--Hb_008878_010 Hb_001007_090--Hb_000521_190 Hb_000134_260 Hb_000134_260 Hb_001007_090--Hb_000134_260 Hb_176472_020 Hb_176472_020 Hb_001007_090--Hb_176472_020 Hb_000866_430 Hb_000866_430 Hb_001007_090--Hb_000866_430 Hb_116420_050 Hb_116420_050 Hb_001007_090--Hb_116420_050 Hb_000042_020 Hb_000042_020 Hb_001143_200--Hb_000042_020 Hb_000280_100 Hb_000280_100 Hb_001143_200--Hb_000280_100 Hb_003935_050 Hb_003935_050 Hb_001143_200--Hb_003935_050 Hb_001040_050 Hb_001040_050 Hb_001143_200--Hb_001040_050 Hb_007441_290 Hb_007441_290 Hb_001143_200--Hb_007441_290 Hb_000388_040 Hb_000388_040 Hb_001143_200--Hb_000388_040 Hb_002221_010--Hb_000115_190 Hb_002693_040 Hb_002693_040 Hb_002221_010--Hb_002693_040 Hb_001279_050 Hb_001279_050 Hb_002221_010--Hb_001279_050 Hb_005162_120 Hb_005162_120 Hb_002221_010--Hb_005162_120 Hb_002221_010--Hb_002218_050 Hb_002221_010--Hb_114292_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.4613 163.048 1068.1 96.4869 6.79471 9.95904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.3998 30.5357 5.54337 6.21372 14.3724

CAGE analysis