Hb_004586_350

Information

Type -
Description -
Location Contig4586: 373416-380044
Sequence    

Annotation

kegg
ID rcu:RCOM_1038420
description purine biosynthesis protein 7, pur7, putative (EC:6.3.2.6)
nr
ID XP_010098671.1
description Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
swissprot
ID P38025
description Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2
trembl
ID W9RG16
description Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Morus notabilis GN=L484_026047 PE=3 SV=1
Gene Ontology
ID GO:0009570
description phosphoribosylaminoimidazole-succinocarboxamide chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43574: 373190-373311 , PASA_asmbl_43575: 379134-380181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_350 0.0 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
2 Hb_009079_030 0.0925119288 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
3 Hb_002477_090 0.1015115553 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
4 Hb_006198_120 0.1034642086 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
5 Hb_025336_020 0.1078059268 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
6 Hb_000920_300 0.1112079164 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
7 Hb_012022_080 0.1117075408 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_007380_060 0.1141772983 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
9 Hb_000106_120 0.1146476055 - - hypothetical protein glysoja_007050 [Glycine soja]
10 Hb_002046_010 0.1159820496 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001232_010 0.1168102273 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
12 Hb_179924_010 0.1180392729 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
13 Hb_003913_070 0.1185007757 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
14 Hb_001168_050 0.1203444305 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
15 Hb_003647_130 0.12053173 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
16 Hb_002400_410 0.1207297171 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
17 Hb_019053_030 0.1208137538 - - PREDICTED: sulfite oxidase [Jatropha curcas]
18 Hb_002005_100 0.1214353549 - - -
19 Hb_003529_170 0.1214406383 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
20 Hb_000069_120 0.1217660044 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_004586_350 Hb_004586_350 Hb_009079_030 Hb_009079_030 Hb_004586_350--Hb_009079_030 Hb_002477_090 Hb_002477_090 Hb_004586_350--Hb_002477_090 Hb_006198_120 Hb_006198_120 Hb_004586_350--Hb_006198_120 Hb_025336_020 Hb_025336_020 Hb_004586_350--Hb_025336_020 Hb_000920_300 Hb_000920_300 Hb_004586_350--Hb_000920_300 Hb_012022_080 Hb_012022_080 Hb_004586_350--Hb_012022_080 Hb_003647_130 Hb_003647_130 Hb_009079_030--Hb_003647_130 Hb_009079_030--Hb_006198_120 Hb_003294_070 Hb_003294_070 Hb_009079_030--Hb_003294_070 Hb_002471_290 Hb_002471_290 Hb_009079_030--Hb_002471_290 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_001473_180 Hb_001473_180 Hb_009079_030--Hb_001473_180 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_001761_130 Hb_001761_130 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_000106_120 Hb_000106_120 Hb_002477_090--Hb_000106_120 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_000538_160 Hb_000538_160 Hb_006198_120--Hb_000538_160 Hb_003529_170 Hb_003529_170 Hb_006198_120--Hb_003529_170 Hb_006198_120--Hb_003913_070 Hb_005271_190 Hb_005271_190 Hb_006198_120--Hb_005271_190 Hb_009486_180 Hb_009486_180 Hb_006198_120--Hb_009486_180 Hb_000088_270 Hb_000088_270 Hb_025336_020--Hb_000088_270 Hb_007423_050 Hb_007423_050 Hb_025336_020--Hb_007423_050 Hb_025336_020--Hb_012022_080 Hb_001019_050 Hb_001019_050 Hb_025336_020--Hb_001019_050 Hb_000008_420 Hb_000008_420 Hb_025336_020--Hb_000008_420 Hb_005489_140 Hb_005489_140 Hb_025336_020--Hb_005489_140 Hb_000920_300--Hb_003913_070 Hb_002456_010 Hb_002456_010 Hb_000920_300--Hb_002456_010 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_000920_300--Hb_004934_050 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100 Hb_000190_090 Hb_000190_090 Hb_012022_080--Hb_000190_090 Hb_000159_120 Hb_000159_120 Hb_012022_080--Hb_000159_120 Hb_021576_010 Hb_021576_010 Hb_012022_080--Hb_021576_010 Hb_000327_250 Hb_000327_250 Hb_012022_080--Hb_000327_250 Hb_011224_160 Hb_011224_160 Hb_012022_080--Hb_011224_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81015 1.65972 1.21649 1.5624 1.27013 1.96444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41345 1.6681 0.887789 4.83267 1.84304

CAGE analysis