Hb_004586_410

Information

Type -
Description -
Location Contig4586: 438963-440126
Sequence    

Annotation

kegg
ID rcu:RCOM_1037570
description ring finger protein, putative
nr
ID XP_002513984.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q8LFY8
description RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2
trembl
ID B9RJR5
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1037570 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl54-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43576: 438679-439364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_410 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_004657_070 0.1575071271 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
3 Hb_000428_040 0.1630394968 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
4 Hb_005183_130 0.1744621705 - - glycogenin, putative [Ricinus communis]
5 Hb_000236_230 0.178604331 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
6 Hb_017434_080 0.1808798362 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000482_080 0.1873705248 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
8 Hb_001758_090 0.1913686435 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
9 Hb_008762_010 0.1918604735 - - dopamine beta-monooxygenase, putative [Ricinus communis]
10 Hb_007311_050 0.1945209394 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000176_080 0.1947149104 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
12 Hb_001214_040 0.1951307907 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
13 Hb_017914_020 0.1956847217 - - -
14 Hb_004586_440 0.1970842844 - - Blue copper protein precursor, putative [Ricinus communis]
15 Hb_003020_200 0.2010620084 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
16 Hb_005914_130 0.2022488855 - - -
17 Hb_000637_100 0.2026613106 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
18 Hb_003645_040 0.2038054853 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
19 Hb_000622_190 0.2069416544 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
20 Hb_064047_020 0.2075497451 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]

Gene co-expression network

sample Hb_004586_410 Hb_004586_410 Hb_004657_070 Hb_004657_070 Hb_004586_410--Hb_004657_070 Hb_000428_040 Hb_000428_040 Hb_004586_410--Hb_000428_040 Hb_005183_130 Hb_005183_130 Hb_004586_410--Hb_005183_130 Hb_000236_230 Hb_000236_230 Hb_004586_410--Hb_000236_230 Hb_017434_080 Hb_017434_080 Hb_004586_410--Hb_017434_080 Hb_000482_080 Hb_000482_080 Hb_004586_410--Hb_000482_080 Hb_004657_070--Hb_000428_040 Hb_004657_070--Hb_000482_080 Hb_000193_130 Hb_000193_130 Hb_004657_070--Hb_000193_130 Hb_000608_090 Hb_000608_090 Hb_004657_070--Hb_000608_090 Hb_031330_010 Hb_031330_010 Hb_004657_070--Hb_031330_010 Hb_004586_440 Hb_004586_440 Hb_004657_070--Hb_004586_440 Hb_116701_010 Hb_116701_010 Hb_000428_040--Hb_116701_010 Hb_000428_040--Hb_000236_230 Hb_000130_350 Hb_000130_350 Hb_000428_040--Hb_000130_350 Hb_008762_010 Hb_008762_010 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140 Hb_000176_080 Hb_000176_080 Hb_005183_130--Hb_000176_080 Hb_005183_130--Hb_004586_440 Hb_005183_130--Hb_000482_080 Hb_000020_140 Hb_000020_140 Hb_005183_130--Hb_000020_140 Hb_001001_070 Hb_001001_070 Hb_005183_130--Hb_001001_070 Hb_000449_070 Hb_000449_070 Hb_005183_130--Hb_000449_070 Hb_001366_110 Hb_001366_110 Hb_000236_230--Hb_001366_110 Hb_000251_120 Hb_000251_120 Hb_000236_230--Hb_000251_120 Hb_000236_230--Hb_116701_010 Hb_000236_230--Hb_000130_350 Hb_000236_230--Hb_005183_130 Hb_003536_090 Hb_003536_090 Hb_017434_080--Hb_003536_090 Hb_007311_050 Hb_007311_050 Hb_017434_080--Hb_007311_050 Hb_000030_130 Hb_000030_130 Hb_017434_080--Hb_000030_130 Hb_005914_130 Hb_005914_130 Hb_017434_080--Hb_005914_130 Hb_008695_220 Hb_008695_220 Hb_017434_080--Hb_008695_220 Hb_000362_030 Hb_000362_030 Hb_000482_080--Hb_000362_030 Hb_000580_210 Hb_000580_210 Hb_000482_080--Hb_000580_210 Hb_000482_080--Hb_004586_440 Hb_000482_080--Hb_000608_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88049 3.50683 0.70708 62.0597 0.176187 0.343464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44069 2.18465 0 0.74298 21.678

CAGE analysis