Hb_004586_420

Information

Type -
Description -
Location Contig4586: 456661-459679
Sequence    

Annotation

kegg
ID rcu:RCOM_1037550
description hypothetical protein
nr
ID XP_012067932.1
description PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15836 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43578: 459025-459471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_420 0.0 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
2 Hb_006573_190 0.0586264692 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
3 Hb_000003_230 0.0658575178 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
4 Hb_007676_080 0.0727370086 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
5 Hb_008494_100 0.0734671473 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
6 Hb_001489_090 0.0746578196 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
7 Hb_000390_300 0.0758145197 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
8 Hb_005914_170 0.0765201724 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
9 Hb_014720_110 0.0776772701 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
10 Hb_000419_020 0.0782404887 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001189_070 0.0811913163 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
12 Hb_003582_060 0.0818009238 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
13 Hb_023001_040 0.0826175959 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
14 Hb_004109_220 0.0832728335 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
15 Hb_001828_150 0.0840147645 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
16 Hb_000431_170 0.0845995372 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
17 Hb_004109_340 0.0847038801 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
18 Hb_000566_120 0.0848436172 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
19 Hb_007928_030 0.0856336737 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
20 Hb_031862_100 0.0860546653 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004586_420 Hb_004586_420 Hb_006573_190 Hb_006573_190 Hb_004586_420--Hb_006573_190 Hb_000003_230 Hb_000003_230 Hb_004586_420--Hb_000003_230 Hb_007676_080 Hb_007676_080 Hb_004586_420--Hb_007676_080 Hb_008494_100 Hb_008494_100 Hb_004586_420--Hb_008494_100 Hb_001489_090 Hb_001489_090 Hb_004586_420--Hb_001489_090 Hb_000390_300 Hb_000390_300 Hb_004586_420--Hb_000390_300 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_006573_190--Hb_000003_230 Hb_003582_060 Hb_003582_060 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150 Hb_006573_190--Hb_000390_300 Hb_000003_230--Hb_007676_080 Hb_003304_020 Hb_003304_020 Hb_000003_230--Hb_003304_020 Hb_000003_230--Hb_003582_060 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_007676_080--Hb_003304_020 Hb_002169_040 Hb_002169_040 Hb_007676_080--Hb_002169_040 Hb_007676_080--Hb_000390_300 Hb_007676_080--Hb_008494_100 Hb_007676_080--Hb_006573_190 Hb_008494_100--Hb_000390_300 Hb_008847_030 Hb_008847_030 Hb_008494_100--Hb_008847_030 Hb_008494_100--Hb_000003_230 Hb_000340_180 Hb_000340_180 Hb_008494_100--Hb_000340_180 Hb_003465_030 Hb_003465_030 Hb_001489_090--Hb_003465_030 Hb_000347_240 Hb_000347_240 Hb_001489_090--Hb_000347_240 Hb_001195_200 Hb_001195_200 Hb_001489_090--Hb_001195_200 Hb_000948_160 Hb_000948_160 Hb_001489_090--Hb_000948_160 Hb_008453_030 Hb_008453_030 Hb_001489_090--Hb_008453_030 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_000390_300--Hb_006615_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.34814 4.14246 6.77737 8.78904 5.17066 4.35081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93153 14.1122 7.8144 9.68827 7.63158

CAGE analysis