Hb_004586_440

Information

Type -
Description -
Location Contig4586: 466012-467273
Sequence    

Annotation

kegg
ID rcu:RCOM_1037530
description Blue copper protein precursor, putative
nr
ID XP_002513980.1
description Blue copper protein precursor, putative [Ricinus communis]
swissprot
ID Q41001
description Blue copper protein OS=Pisum sativum PE=2 SV=1
trembl
ID B9RJR1
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_1037530 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43580: 465905-466325 , PASA_asmbl_43581: 466350-467286
cDNA
(Sanger)
(ID:Location)		 040_K18.ab1: 466353-467286

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_440 0.0 - - Blue copper protein precursor, putative [Ricinus communis]
2 Hb_000608_090 0.0810325514 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001369_480 0.0811503751 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
4 Hb_000362_030 0.0844230875 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_071079_040 0.0879157827 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
6 Hb_031330_010 0.0958888088 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
7 Hb_011224_070 0.1023636169 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
8 Hb_003376_060 0.1052371816 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
9 Hb_005616_020 0.1057937027 - - kinase, putative [Ricinus communis]
10 Hb_001456_030 0.1067076682 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
11 Hb_004225_120 0.1082200499 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
12 Hb_000339_060 0.1088792941 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_001096_010 0.1091516881 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
14 Hb_012114_090 0.1092060971 - - tubulin beta chain, putative [Ricinus communis]
15 Hb_001269_180 0.1096319562 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
16 Hb_000449_070 0.1108911186 - - unnamed protein product [Vitis vinifera]
17 Hb_000482_080 0.1116293171 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
18 Hb_000699_220 0.1119117956 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
19 Hb_006717_060 0.1125773707 - - PREDICTED: peroxidase 42 [Jatropha curcas]
20 Hb_001158_170 0.1139972029 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004586_440 Hb_004586_440 Hb_000608_090 Hb_000608_090 Hb_004586_440--Hb_000608_090 Hb_001369_480 Hb_001369_480 Hb_004586_440--Hb_001369_480 Hb_000362_030 Hb_000362_030 Hb_004586_440--Hb_000362_030 Hb_071079_040 Hb_071079_040 Hb_004586_440--Hb_071079_040 Hb_031330_010 Hb_031330_010 Hb_004586_440--Hb_031330_010 Hb_011224_070 Hb_011224_070 Hb_004586_440--Hb_011224_070 Hb_005616_020 Hb_005616_020 Hb_000608_090--Hb_005616_020 Hb_000608_090--Hb_031330_010 Hb_001158_170 Hb_001158_170 Hb_000608_090--Hb_001158_170 Hb_003376_060 Hb_003376_060 Hb_000608_090--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_000608_090--Hb_001456_030 Hb_012114_090 Hb_012114_090 Hb_001369_480--Hb_012114_090 Hb_000336_120 Hb_000336_120 Hb_001369_480--Hb_000336_120 Hb_001269_180 Hb_001269_180 Hb_001369_480--Hb_001269_180 Hb_055276_010 Hb_055276_010 Hb_001369_480--Hb_055276_010 Hb_006717_060 Hb_006717_060 Hb_001369_480--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_001369_480--Hb_000699_220 Hb_000362_030--Hb_031330_010 Hb_000362_030--Hb_001369_480 Hb_000362_030--Hb_000608_090 Hb_000645_230 Hb_000645_230 Hb_000362_030--Hb_000645_230 Hb_000482_080 Hb_000482_080 Hb_000362_030--Hb_000482_080 Hb_000497_030 Hb_000497_030 Hb_071079_040--Hb_000497_030 Hb_071079_040--Hb_000699_220 Hb_000339_060 Hb_000339_060 Hb_071079_040--Hb_000339_060 Hb_071079_040--Hb_031330_010 Hb_071079_040--Hb_000645_230 Hb_071079_040--Hb_006717_060 Hb_031330_010--Hb_000645_230 Hb_000483_340 Hb_000483_340 Hb_031330_010--Hb_000483_340 Hb_004884_040 Hb_004884_040 Hb_031330_010--Hb_004884_040 Hb_000684_190 Hb_000684_190 Hb_031330_010--Hb_000684_190 Hb_001856_250 Hb_001856_250 Hb_031330_010--Hb_001856_250 Hb_003747_160 Hb_003747_160 Hb_011224_070--Hb_003747_160 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_001096_010 Hb_001096_010 Hb_011224_070--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_011224_070--Hb_005614_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.33828 22.934 54.0985 647.191 4.1857 4.33949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31856 0.665363 0.389246 3.84957 205.471

CAGE analysis