Hb_004586_450

Information

Type -
Description -
Location Contig4586: 469215-470629
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_450 0.0 - - -
2 Hb_056768_010 0.1466865472 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
3 Hb_000048_100 0.1555666307 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001057_050 0.1949095495 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
5 Hb_000562_080 0.2020026547 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001047_140 0.2073382415 - - -
7 Hb_029888_020 0.208424507 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
8 Hb_004502_050 0.2110903118 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
9 Hb_000832_240 0.2135874698 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004502_080 0.214427321 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
11 Hb_030765_010 0.2164935423 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
12 Hb_000086_330 0.2180910154 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
13 Hb_008442_010 0.2185676271 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
14 Hb_000847_140 0.2286458111 - - -
15 Hb_000367_170 0.2305221931 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
16 Hb_000122_030 0.2310230162 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
17 Hb_120221_010 0.2312470619 - - -
18 Hb_080147_090 0.2317353276 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
19 Hb_000003_350 0.2320904439 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
20 Hb_005690_020 0.2320992005 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]

Gene co-expression network

sample Hb_004586_450 Hb_004586_450 Hb_056768_010 Hb_056768_010 Hb_004586_450--Hb_056768_010 Hb_000048_100 Hb_000048_100 Hb_004586_450--Hb_000048_100 Hb_001057_050 Hb_001057_050 Hb_004586_450--Hb_001057_050 Hb_000562_080 Hb_000562_080 Hb_004586_450--Hb_000562_080 Hb_001047_140 Hb_001047_140 Hb_004586_450--Hb_001047_140 Hb_029888_020 Hb_029888_020 Hb_004586_450--Hb_029888_020 Hb_056768_010--Hb_000048_100 Hb_029982_010 Hb_029982_010 Hb_056768_010--Hb_029982_010 Hb_008667_050 Hb_008667_050 Hb_056768_010--Hb_008667_050 Hb_078604_010 Hb_078604_010 Hb_056768_010--Hb_078604_010 Hb_005690_020 Hb_005690_020 Hb_056768_010--Hb_005690_020 Hb_030765_010 Hb_030765_010 Hb_000048_100--Hb_030765_010 Hb_000048_100--Hb_000562_080 Hb_007574_060 Hb_007574_060 Hb_000048_100--Hb_007574_060 Hb_000348_040 Hb_000348_040 Hb_000048_100--Hb_000348_040 Hb_004807_060 Hb_004807_060 Hb_001057_050--Hb_004807_060 Hb_000193_350 Hb_000193_350 Hb_001057_050--Hb_000193_350 Hb_102156_010 Hb_102156_010 Hb_001057_050--Hb_102156_010 Hb_000175_400 Hb_000175_400 Hb_001057_050--Hb_000175_400 Hb_017711_010 Hb_017711_010 Hb_001057_050--Hb_017711_010 Hb_002259_150 Hb_002259_150 Hb_001057_050--Hb_002259_150 Hb_001405_130 Hb_001405_130 Hb_000562_080--Hb_001405_130 Hb_004502_080 Hb_004502_080 Hb_000562_080--Hb_004502_080 Hb_000562_080--Hb_029888_020 Hb_188382_010 Hb_188382_010 Hb_000562_080--Hb_188382_010 Hb_008557_020 Hb_008557_020 Hb_000562_080--Hb_008557_020 Hb_000331_320 Hb_000331_320 Hb_001047_140--Hb_000331_320 Hb_001864_030 Hb_001864_030 Hb_001047_140--Hb_001864_030 Hb_001047_140--Hb_008667_050 Hb_000453_210 Hb_000453_210 Hb_001047_140--Hb_000453_210 Hb_000331_310 Hb_000331_310 Hb_001047_140--Hb_000331_310 Hb_001047_140--Hb_004502_080 Hb_086703_010 Hb_086703_010 Hb_029888_020--Hb_086703_010 Hb_029888_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_029888_020--Hb_003746_060 Hb_029888_020--Hb_000193_350 Hb_029888_020--Hb_017711_010 Hb_029888_020--Hb_004502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.595625 0.853171 0.208533 0.163376 0.847909 5.96834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.92106 4.33018 0.255663 0.344456 0

CAGE analysis