Hb_004597_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4597: 42426-44471
Sequence    

Annotation

kegg
ID rcu:RCOM_0864470
description Transcription factor AtMYC2, putative (EC:1.3.1.74)
nr
ID XP_012076236.1
description PREDICTED: transcription factor MYC2 [Jatropha curcas]
swissprot
ID Q39204
description Transcription factor MYC2 OS=Arabidopsis thaliana GN=MYC2 PE=1 SV=2
trembl
ID A0A067KDM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12669 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 020_C19.ab1: 43161-43947 , 030_A24.ab1: 43161-43913 , 040_J09.ab1: 43161-43900

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004597_010 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
2 Hb_155396_010 0.1059765445 - - TMV resistance protein N, putative [Ricinus communis]
3 Hb_009771_100 0.1185610042 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
4 Hb_003411_110 0.1211815459 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
5 Hb_000025_330 0.1219379439 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
6 Hb_000084_030 0.1264669485 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005541_010 0.1270326614 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
8 Hb_004109_030 0.1285521927 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003682_030 0.1307793838 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
10 Hb_008695_090 0.1320312434 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
11 Hb_001171_070 0.1321739612 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
12 Hb_003097_100 0.1325910278 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
13 Hb_001864_060 0.1326210678 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
14 Hb_001477_070 0.1329987165 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001247_120 0.1343168415 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
16 Hb_000457_050 0.1354913582 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
17 Hb_116086_010 0.1365681449 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
18 Hb_000672_030 0.1370257564 - - PREDICTED: uncharacterized protein LOC105628931 isoform X1 [Jatropha curcas]
19 Hb_002379_050 0.1372721123 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
20 Hb_000069_230 0.1373038772 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]

Gene co-expression network

sample Hb_004597_010 Hb_004597_010 Hb_155396_010 Hb_155396_010 Hb_004597_010--Hb_155396_010 Hb_009771_100 Hb_009771_100 Hb_004597_010--Hb_009771_100 Hb_003411_110 Hb_003411_110 Hb_004597_010--Hb_003411_110 Hb_000025_330 Hb_000025_330 Hb_004597_010--Hb_000025_330 Hb_000084_030 Hb_000084_030 Hb_004597_010--Hb_000084_030 Hb_005541_010 Hb_005541_010 Hb_004597_010--Hb_005541_010 Hb_003373_040 Hb_003373_040 Hb_155396_010--Hb_003373_040 Hb_004109_030 Hb_004109_030 Hb_155396_010--Hb_004109_030 Hb_116086_010 Hb_116086_010 Hb_155396_010--Hb_116086_010 Hb_005725_060 Hb_005725_060 Hb_155396_010--Hb_005725_060 Hb_001864_060 Hb_001864_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030 Hb_031711_010 Hb_031711_010 Hb_009771_100--Hb_031711_010 Hb_009780_100 Hb_009780_100 Hb_009771_100--Hb_009780_100 Hb_011909_060 Hb_011909_060 Hb_009771_100--Hb_011909_060 Hb_001141_370 Hb_001141_370 Hb_009771_100--Hb_001141_370 Hb_000457_050 Hb_000457_050 Hb_009771_100--Hb_000457_050 Hb_000061_490 Hb_000061_490 Hb_009771_100--Hb_000061_490 Hb_000832_030 Hb_000832_030 Hb_003411_110--Hb_000832_030 Hb_003411_110--Hb_116086_010 Hb_011930_110 Hb_011930_110 Hb_003411_110--Hb_011930_110 Hb_000334_220 Hb_000334_220 Hb_003411_110--Hb_000334_220 Hb_003411_110--Hb_000084_030 Hb_002284_280 Hb_002284_280 Hb_003411_110--Hb_002284_280 Hb_000025_330--Hb_001864_060 Hb_000140_070 Hb_000140_070 Hb_000025_330--Hb_000140_070 Hb_001247_120 Hb_001247_120 Hb_000025_330--Hb_001247_120 Hb_001054_030 Hb_001054_030 Hb_000025_330--Hb_001054_030 Hb_000525_010 Hb_000525_010 Hb_000025_330--Hb_000525_010 Hb_001123_290 Hb_001123_290 Hb_000025_330--Hb_001123_290 Hb_002411_030 Hb_002411_030 Hb_000084_030--Hb_002411_030 Hb_006346_040 Hb_006346_040 Hb_000084_030--Hb_006346_040 Hb_003299_030 Hb_003299_030 Hb_000084_030--Hb_003299_030 Hb_000084_030--Hb_000457_050 Hb_001477_070 Hb_001477_070 Hb_000084_030--Hb_001477_070 Hb_140506_010 Hb_140506_010 Hb_005541_010--Hb_140506_010 Hb_005016_160 Hb_005016_160 Hb_005541_010--Hb_005016_160 Hb_003052_140 Hb_003052_140 Hb_005541_010--Hb_003052_140 Hb_005541_010--Hb_000334_220 Hb_012564_030 Hb_012564_030 Hb_005541_010--Hb_012564_030 Hb_005541_010--Hb_002411_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
211.756 510.397 193.085 217.446 197.762 231.377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
137.125 144.206 215.142 42.31 73.4572

CAGE analysis