Hb_004602_010

Information

Type -
Description -
Location Contig4602: 5344-7298
Sequence    

Annotation

kegg
ID sot:102597679
description uncharacterized LOC102597679
nr
ID XP_010917662.1
description PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID K4AXD2
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g073870.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43688: 5211-5832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004602_010 0.0 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
2 Hb_000759_040 0.069884574 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_004218_140 0.0708430224 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
4 Hb_005892_050 0.073235435 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
5 Hb_000008_150 0.0761242006 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
6 Hb_001488_420 0.0808115506 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
7 Hb_008304_010 0.0815279671 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
8 Hb_062807_010 0.08462062 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
9 Hb_004855_080 0.0876126909 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
10 Hb_003101_020 0.0923395717 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
11 Hb_003043_130 0.1065394702 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
12 Hb_005535_070 0.1094555283 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002391_030 0.1106606562 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
14 Hb_108576_020 0.1122700695 - - conserved hypothetical protein [Ricinus communis]
15 Hb_174168_010 0.1127602102 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_007313_030 0.1129242182 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
17 Hb_003938_230 0.1132441482 - - Potassium transporter, putative [Ricinus communis]
18 Hb_000627_040 0.1168533599 - - leucine-rich repeat protein, putative [Ricinus communis]
19 Hb_001439_050 0.1169590405 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
20 Hb_000947_010 0.1177224017 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]

Gene co-expression network

sample Hb_004602_010 Hb_004602_010 Hb_000759_040 Hb_000759_040 Hb_004602_010--Hb_000759_040 Hb_004218_140 Hb_004218_140 Hb_004602_010--Hb_004218_140 Hb_005892_050 Hb_005892_050 Hb_004602_010--Hb_005892_050 Hb_000008_150 Hb_000008_150 Hb_004602_010--Hb_000008_150 Hb_001488_420 Hb_001488_420 Hb_004602_010--Hb_001488_420 Hb_008304_010 Hb_008304_010 Hb_004602_010--Hb_008304_010 Hb_000759_040--Hb_005892_050 Hb_000023_130 Hb_000023_130 Hb_000759_040--Hb_000023_130 Hb_004855_080 Hb_004855_080 Hb_000759_040--Hb_004855_080 Hb_000759_040--Hb_001488_420 Hb_006618_110 Hb_006618_110 Hb_000759_040--Hb_006618_110 Hb_004218_140--Hb_001488_420 Hb_121313_010 Hb_121313_010 Hb_004218_140--Hb_121313_010 Hb_004218_140--Hb_005892_050 Hb_004218_140--Hb_008304_010 Hb_000627_040 Hb_000627_040 Hb_004218_140--Hb_000627_040 Hb_005892_050--Hb_006618_110 Hb_007545_070 Hb_007545_070 Hb_005892_050--Hb_007545_070 Hb_003101_020 Hb_003101_020 Hb_005892_050--Hb_003101_020 Hb_000008_150--Hb_004855_080 Hb_000008_150--Hb_001488_420 Hb_001405_040 Hb_001405_040 Hb_000008_150--Hb_001405_040 Hb_003506_010 Hb_003506_010 Hb_000008_150--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_000008_150--Hb_005892_040 Hb_001488_420--Hb_004855_080 Hb_001488_420--Hb_003506_010 Hb_003938_230 Hb_003938_230 Hb_008304_010--Hb_003938_230 Hb_062807_010 Hb_062807_010 Hb_008304_010--Hb_062807_010 Hb_008304_010--Hb_001488_420 Hb_004592_010 Hb_004592_010 Hb_008304_010--Hb_004592_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.367414 3.43885 1.68536 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.727042 1.85031

CAGE analysis