Hb_004602_030

Information

Type -
Description -
Location Contig4602: 30366-30677
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_152862
description HFO1503; histone H4
nr
ID ACG30677.1
description histone H4 [Zea mays]
swissprot
ID P0CG89
description Histone H4 OS=Glycine max PE=3 SV=1
trembl
ID Q5NSW2
description Histone H4 (Fragment) OS=Fragaria ananassa PE=2 SV=1
Gene Ontology
ID GO:0000786
description histone h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43694: 29599-30887 , PASA_asmbl_43695: 29712-30482
cDNA
(Sanger)
(ID:Location)		 015_D15.ab1: 29599-30885 , 015_G16.ab1: 29599-30885 , 035_K01.ab1: 29599-30887

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004602_030 0.0 - - histone H4 [Zea mays]
2 Hb_005588_070 0.1131786357 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
3 Hb_172706_030 0.1198951661 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
4 Hb_012675_070 0.1274817255 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
5 Hb_140543_010 0.1327864519 - - -
6 Hb_002878_010 0.1377607735 - - -
7 Hb_000049_060 0.1387526482 - - unknown [Medicago truncatula]
8 Hb_004336_050 0.1389426089 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
9 Hb_004055_070 0.13982661 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
10 Hb_016734_070 0.1406001738 - - hypothetical_protein [Oryza brachyantha]
11 Hb_005235_030 0.1421372428 - - PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
12 Hb_005867_020 0.1432302249 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
13 Hb_016604_030 0.1454348366 - - histone H4 [Zea mays]
14 Hb_080601_020 0.1462364426 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
15 Hb_130235_010 0.1464539148 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
16 Hb_003018_050 0.1468757868 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
17 Hb_000322_140 0.1484034308 - - hypothetical protein RCOM_1047200 [Ricinus communis]
18 Hb_000672_120 0.1488655007 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
19 Hb_014834_030 0.1500206979 - - -
20 Hb_001754_070 0.1504963263 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]

Gene co-expression network

sample Hb_004602_030 Hb_004602_030 Hb_005588_070 Hb_005588_070 Hb_004602_030--Hb_005588_070 Hb_172706_030 Hb_172706_030 Hb_004602_030--Hb_172706_030 Hb_012675_070 Hb_012675_070 Hb_004602_030--Hb_012675_070 Hb_140543_010 Hb_140543_010 Hb_004602_030--Hb_140543_010 Hb_002878_010 Hb_002878_010 Hb_004602_030--Hb_002878_010 Hb_000049_060 Hb_000049_060 Hb_004602_030--Hb_000049_060 Hb_004336_050 Hb_004336_050 Hb_005588_070--Hb_004336_050 Hb_005588_070--Hb_012675_070 Hb_180301_010 Hb_180301_010 Hb_005588_070--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_005588_070--Hb_001504_080 Hb_000672_120 Hb_000672_120 Hb_005588_070--Hb_000672_120 Hb_005588_070--Hb_002878_010 Hb_172706_030--Hb_004336_050 Hb_172706_030--Hb_140543_010 Hb_172706_030--Hb_000672_120 Hb_172706_030--Hb_002878_010 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020 Hb_002259_160 Hb_002259_160 Hb_012675_070--Hb_002259_160 Hb_000083_170 Hb_000083_170 Hb_012675_070--Hb_000083_170 Hb_003352_040 Hb_003352_040 Hb_012675_070--Hb_003352_040 Hb_037887_010 Hb_037887_010 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_001754_070 Hb_001754_070 Hb_140543_010--Hb_001754_070 Hb_130235_010 Hb_130235_010 Hb_140543_010--Hb_130235_010 Hb_000656_340 Hb_000656_340 Hb_140543_010--Hb_000656_340 Hb_000086_550 Hb_000086_550 Hb_140543_010--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_140543_010--Hb_005357_130 Hb_001953_090 Hb_001953_090 Hb_002878_010--Hb_001953_090 Hb_000322_140 Hb_000322_140 Hb_002878_010--Hb_000322_140 Hb_002878_010--Hb_004336_050 Hb_004374_140 Hb_004374_140 Hb_002878_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_002878_010--Hb_001461_010 Hb_000049_060--Hb_012675_070 Hb_000049_060--Hb_005588_070 Hb_000493_010 Hb_000493_010 Hb_000049_060--Hb_000493_010 Hb_000049_060--Hb_172706_030 Hb_001571_110 Hb_001571_110 Hb_000049_060--Hb_001571_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.427 29.0653 148.314 284.723 57.3956 332.131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
408.042 455.917 238.561 91.9123 78.0832

CAGE analysis