Hb_004602_040

Information

Type -
Description -
Location Contig4602: 50736-65458
Sequence    

Annotation

kegg
ID rcu:RCOM_0745220
description leukocyte receptor cluster (lrc) member, putative
nr
ID XP_012073405.1
description PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q32NW2
description Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis GN=leng8 PE=2 SV=1
trembl
ID A0A067LNS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43696: 52488-52925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004602_040 0.0 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
2 Hb_001912_100 0.0555110481 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
3 Hb_000084_120 0.0599416437 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
4 Hb_000244_220 0.0682784909 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
5 Hb_000101_240 0.07051793 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
6 Hb_000035_290 0.0709363897 - - RNA recognition motif-containing family protein [Populus trichocarpa]
7 Hb_123352_020 0.0749097845 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
8 Hb_003428_070 0.0755414115 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
9 Hb_000487_290 0.0757646433 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
10 Hb_001268_350 0.0776239986 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
11 Hb_000856_310 0.077895006 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
12 Hb_001700_040 0.0789530499 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
13 Hb_016898_010 0.0793304251 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
14 Hb_000343_120 0.0795554141 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
15 Hb_003362_070 0.0798437552 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
16 Hb_003935_030 0.084085706 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
17 Hb_003952_150 0.0843819999 - - PREDICTED: cactin [Jatropha curcas]
18 Hb_006252_020 0.0845766344 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
19 Hb_004117_310 0.0854582738 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
20 Hb_048476_180 0.0854815078 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]

Gene co-expression network

sample Hb_004602_040 Hb_004602_040 Hb_001912_100 Hb_001912_100 Hb_004602_040--Hb_001912_100 Hb_000084_120 Hb_000084_120 Hb_004602_040--Hb_000084_120 Hb_000244_220 Hb_000244_220 Hb_004602_040--Hb_000244_220 Hb_000101_240 Hb_000101_240 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020 Hb_000030_040 Hb_000030_040 Hb_001912_100--Hb_000030_040 Hb_001912_100--Hb_000244_220 Hb_000046_010 Hb_000046_010 Hb_001912_100--Hb_000046_010 Hb_003935_030 Hb_003935_030 Hb_001912_100--Hb_003935_030 Hb_000487_290 Hb_000487_290 Hb_001912_100--Hb_000487_290 Hb_016898_010 Hb_016898_010 Hb_000084_120--Hb_016898_010 Hb_003362_070 Hb_003362_070 Hb_000084_120--Hb_003362_070 Hb_003952_150 Hb_003952_150 Hb_000084_120--Hb_003952_150 Hb_000084_120--Hb_000101_240 Hb_003428_070 Hb_003428_070 Hb_000084_120--Hb_003428_070 Hb_000856_310 Hb_000856_310 Hb_000244_220--Hb_000856_310 Hb_000244_220--Hb_000046_010 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_009411_010 Hb_009411_010 Hb_000101_240--Hb_009411_010 Hb_000101_240--Hb_016898_010 Hb_000101_240--Hb_003428_070 Hb_048476_180 Hb_048476_180 Hb_000101_240--Hb_048476_180 Hb_000101_240--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000035_290--Hb_000166_130 Hb_000343_120 Hb_000343_120 Hb_000035_290--Hb_000343_120 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_002784_110 Hb_002784_110 Hb_000035_290--Hb_002784_110 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_123352_020--Hb_000487_290 Hb_007163_090 Hb_007163_090 Hb_123352_020--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_005731_030 Hb_005731_030 Hb_123352_020--Hb_005731_030 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39031 4.20682 1.19492 1.59941 3.65405 5.56629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48035 2.59939 2.70274 3.63723 2.09847

CAGE analysis