Hb_004604_030

Information

Type -
Description -
Location Contig4604: 24844-27037
Sequence    

Annotation

kegg
ID vvi:100253626
description LRR receptor-like serine/threonine-protein kinase GSO1
nr
ID CDP08515.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID K7MIF1
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016740
description leucine-rich repeat receptor protein kinase exs

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004604_030 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000101_300 0.1260738855 desease resistance Gene Name: NB-ARC hypothetical protein B456_002G046500, partial [Gossypium raimondii]
3 Hb_004032_330 0.1405349703 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
4 Hb_005016_100 0.1423091408 - - -
5 Hb_007472_020 0.1624278787 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
6 Hb_021409_120 0.1709225138 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_000770_010 0.174247308 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
8 Hb_002006_060 0.1958063587 - - PREDICTED: oleosin 1-like [Jatropha curcas]
9 Hb_061908_020 0.2031459047 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_000002_090 0.2039938001 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
11 Hb_001391_100 0.2069992766 - - AMP dependent ligase, putative [Ricinus communis]
12 Hb_027337_030 0.2071037599 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
13 Hb_005155_010 0.2167906028 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000450_180 0.2172180232 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_062229_010 0.2189653495 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_009247_030 0.2237230352 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_011287_060 0.2273902646 - - -
18 Hb_010055_020 0.2278657606 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
19 Hb_165080_010 0.2288957938 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
20 Hb_004605_020 0.2307997832 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]

Gene co-expression network

sample Hb_004604_030 Hb_004604_030 Hb_000101_300 Hb_000101_300 Hb_004604_030--Hb_000101_300 Hb_004032_330 Hb_004032_330 Hb_004604_030--Hb_004032_330 Hb_005016_100 Hb_005016_100 Hb_004604_030--Hb_005016_100 Hb_007472_020 Hb_007472_020 Hb_004604_030--Hb_007472_020 Hb_021409_120 Hb_021409_120 Hb_004604_030--Hb_021409_120 Hb_000770_010 Hb_000770_010 Hb_004604_030--Hb_000770_010 Hb_000101_300--Hb_007472_020 Hb_000101_300--Hb_004032_330 Hb_000101_300--Hb_000770_010 Hb_000101_300--Hb_021409_120 Hb_000101_300--Hb_005016_100 Hb_004032_330--Hb_005016_100 Hb_004032_330--Hb_000770_010 Hb_004032_330--Hb_021409_120 Hb_027337_030 Hb_027337_030 Hb_004032_330--Hb_027337_030 Hb_003077_140 Hb_003077_140 Hb_004032_330--Hb_003077_140 Hb_005016_100--Hb_000770_010 Hb_002010_070 Hb_002010_070 Hb_005016_100--Hb_002010_070 Hb_000614_190 Hb_000614_190 Hb_005016_100--Hb_000614_190 Hb_001357_360 Hb_001357_360 Hb_005016_100--Hb_001357_360 Hb_007472_020--Hb_004032_330 Hb_007472_020--Hb_000770_010 Hb_000703_180 Hb_000703_180 Hb_007472_020--Hb_000703_180 Hb_007472_020--Hb_021409_120 Hb_021409_120--Hb_000770_010 Hb_006483_090 Hb_006483_090 Hb_021409_120--Hb_006483_090 Hb_000270_250 Hb_000270_250 Hb_021409_120--Hb_000270_250 Hb_000500_230 Hb_000500_230 Hb_021409_120--Hb_000500_230 Hb_000007_440 Hb_000007_440 Hb_021409_120--Hb_000007_440 Hb_000770_010--Hb_006483_090 Hb_004864_020 Hb_004864_020 Hb_000770_010--Hb_004864_020 Hb_000679_260 Hb_000679_260 Hb_000770_010--Hb_000679_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0715117 0.0199937 0.0286807 0 0.0229341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0186992 0.0491118

CAGE analysis