Hb_004607_030

Information

Type -
Description -
Location Contig4607: 21526-23574
Sequence    

Annotation

kegg
ID vvi:100248441
description pentatricopeptide repeat-containing protein At2g22410, mitochondrial
nr
ID XP_012090704.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
swissprot
ID Q9SJZ3
description Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1
trembl
ID A0A067JE21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25908 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
2 Hb_001959_190 0.0603640814 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
3 Hb_000696_040 0.0741388173 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_000567_120 0.0742921298 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
5 Hb_010608_050 0.0767016082 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
6 Hb_008695_100 0.0777668312 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
7 Hb_025557_030 0.0837599717 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
8 Hb_004375_150 0.0866199953 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
9 Hb_000373_130 0.0892145482 - - PREDICTED: protein FAM188A [Jatropha curcas]
10 Hb_016901_010 0.0905412331 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_000206_240 0.0913617048 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009178_030 0.0915733202 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008725_260 0.0919647393 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
14 Hb_011030_020 0.0931553365 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
15 Hb_000723_080 0.0934796751 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
16 Hb_001014_030 0.0948076187 - - ATP binding protein, putative [Ricinus communis]
17 Hb_020805_130 0.096396077 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_007532_030 0.096476438 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
19 Hb_000617_150 0.0965450928 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
20 Hb_001633_210 0.0966929992 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004607_030 Hb_004607_030 Hb_001959_190 Hb_001959_190 Hb_004607_030--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_000567_120 Hb_000567_120 Hb_004607_030--Hb_000567_120 Hb_010608_050 Hb_010608_050 Hb_004607_030--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_004607_030--Hb_008695_100 Hb_025557_030 Hb_025557_030 Hb_004607_030--Hb_025557_030 Hb_020805_130 Hb_020805_130 Hb_001959_190--Hb_020805_130 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_009803_050 Hb_009803_050 Hb_001959_190--Hb_009803_050 Hb_001507_040 Hb_001507_040 Hb_001959_190--Hb_001507_040 Hb_001699_130 Hb_001699_130 Hb_000696_040--Hb_001699_130 Hb_016901_010 Hb_016901_010 Hb_000696_040--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_000696_040--Hb_000617_150 Hb_000062_220 Hb_000062_220 Hb_000696_040--Hb_000062_220 Hb_002631_060 Hb_002631_060 Hb_000696_040--Hb_002631_060 Hb_000567_120--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_010608_050--Hb_008695_100 Hb_011030_020 Hb_011030_020 Hb_010608_050--Hb_011030_020 Hb_010608_050--Hb_000617_150 Hb_010608_050--Hb_001699_130 Hb_011534_030 Hb_011534_030 Hb_010608_050--Hb_011534_030 Hb_008695_100--Hb_000723_080 Hb_005162_070 Hb_005162_070 Hb_008695_100--Hb_005162_070 Hb_008695_100--Hb_000617_150 Hb_002235_280 Hb_002235_280 Hb_008695_100--Hb_002235_280 Hb_000318_330 Hb_000318_330 Hb_025557_030--Hb_000318_330 Hb_027472_170 Hb_027472_170 Hb_025557_030--Hb_027472_170 Hb_000019_130 Hb_000019_130 Hb_025557_030--Hb_000019_130 Hb_004375_150 Hb_004375_150 Hb_025557_030--Hb_004375_150 Hb_025557_030--Hb_011030_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.382491 0.522277 0.203569 0.414965 0.307533 0.495752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.527309 0.829812 1.24656 0.398823 0.292488

CAGE analysis