Hb_004607_050

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig4607: 31671-33035
Sequence    

Annotation

kegg
ID rcu:RCOM_1577400
description transcription factor, putative
nr
ID XP_002513474.1
description transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIA5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1577400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_050 0.0 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
2 Hb_000999_050 0.0387771783 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
3 Hb_000866_170 0.0763982806 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_005490_030 0.0772372545 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
5 Hb_002942_100 0.081674304 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
6 Hb_000185_040 0.0819823168 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
7 Hb_006938_080 0.0827274477 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
8 Hb_001009_170 0.0832435578 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_002481_080 0.0837441366 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
10 Hb_001014_030 0.0841952015 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001619_070 0.0867405483 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
12 Hb_002740_180 0.0872535405 - - conserved hypothetical protein [Ricinus communis]
13 Hb_089032_040 0.0875008617 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
14 Hb_004837_130 0.0891546344 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
15 Hb_004994_220 0.0892406308 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
16 Hb_002217_300 0.0908014775 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
17 Hb_000890_210 0.0911516256 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
18 Hb_015175_020 0.0917109656 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
19 Hb_000977_110 0.0917431486 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
20 Hb_011485_070 0.0924654506 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004607_050 Hb_004607_050 Hb_000999_050 Hb_000999_050 Hb_004607_050--Hb_000999_050 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_006938_080 Hb_006938_080 Hb_004607_050--Hb_006938_080 Hb_004994_220 Hb_004994_220 Hb_000999_050--Hb_004994_220 Hb_004837_130 Hb_004837_130 Hb_000999_050--Hb_004837_130 Hb_002740_180 Hb_002740_180 Hb_000999_050--Hb_002740_180 Hb_000999_050--Hb_006938_080 Hb_001009_170 Hb_001009_170 Hb_000999_050--Hb_001009_170 Hb_000245_040 Hb_000245_040 Hb_000866_170--Hb_000245_040 Hb_000297_010 Hb_000297_010 Hb_000866_170--Hb_000297_010 Hb_000395_190 Hb_000395_190 Hb_000866_170--Hb_000395_190 Hb_000890_210 Hb_000890_210 Hb_000866_170--Hb_000890_210 Hb_004724_150 Hb_004724_150 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170 Hb_005490_030--Hb_001009_170 Hb_001344_010 Hb_001344_010 Hb_005490_030--Hb_001344_010 Hb_023001_060 Hb_023001_060 Hb_005490_030--Hb_023001_060 Hb_000172_290 Hb_000172_290 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005054_100 Hb_005054_100 Hb_005490_030--Hb_005054_100 Hb_003253_040 Hb_003253_040 Hb_002942_100--Hb_003253_040 Hb_002311_040 Hb_002311_040 Hb_002942_100--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_002942_100--Hb_006915_030 Hb_004143_130 Hb_004143_130 Hb_002942_100--Hb_004143_130 Hb_012022_090 Hb_012022_090 Hb_002942_100--Hb_012022_090 Hb_002942_100--Hb_001341_170 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_000185_040--Hb_002740_180 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_006938_080--Hb_000245_040 Hb_002809_050 Hb_002809_050 Hb_006938_080--Hb_002809_050 Hb_000646_050 Hb_000646_050 Hb_006938_080--Hb_000646_050 Hb_006938_080--Hb_000866_170 Hb_000107_490 Hb_000107_490 Hb_006938_080--Hb_000107_490 Hb_006938_080--Hb_000395_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4713 5.12549 2.40035 6.78335 5.70484 7.59677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.24647 6.46808 13.1315 9.30073 6.1665

CAGE analysis