Hb_004607_060

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4607: 39052-41301
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20400g
description POPTRDRAFT_1074580; hypothetical protein
nr
ID XP_012089972.1
description PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
swissprot
ID Q9SVY1
description Zinc finger protein WIP2 OS=Arabidopsis thaliana GN=WIP2 PE=1 SV=1
trembl
ID A0A067JE16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25903 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein transparent testa 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_060 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
2 Hb_000724_060 0.081882401 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
3 Hb_001408_080 0.0875166558 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
4 Hb_012132_050 0.0877160264 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
5 Hb_000964_040 0.0883682141 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
6 Hb_150299_010 0.0976389137 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
7 Hb_005127_050 0.0990764717 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
8 Hb_009783_010 0.1013569141 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
9 Hb_000827_020 0.103861335 - - unnamed protein product [Coffea canephora]
10 Hb_003032_110 0.1046516411 - - -
11 Hb_009079_020 0.1065663514 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
12 Hb_001110_060 0.107170228 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
13 Hb_007122_020 0.1081018356 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_001136_040 0.1092992546 - - amino acid transporter, putative [Ricinus communis]
15 Hb_009785_030 0.1148519991 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
16 Hb_103225_030 0.1150833789 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
17 Hb_002997_150 0.115428583 - - hypothetical protein RCOM_1406750 [Ricinus communis]
18 Hb_036520_030 0.1158854583 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
19 Hb_002388_070 0.1174352823 - - ring finger protein, putative [Ricinus communis]
20 Hb_002260_140 0.1175110689 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004607_060 Hb_004607_060 Hb_000724_060 Hb_000724_060 Hb_004607_060--Hb_000724_060 Hb_001408_080 Hb_001408_080 Hb_004607_060--Hb_001408_080 Hb_012132_050 Hb_012132_050 Hb_004607_060--Hb_012132_050 Hb_000964_040 Hb_000964_040 Hb_004607_060--Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_004607_060--Hb_150299_010 Hb_005127_050 Hb_005127_050 Hb_004607_060--Hb_005127_050 Hb_009079_020 Hb_009079_020 Hb_000724_060--Hb_009079_020 Hb_015175_070 Hb_015175_070 Hb_000724_060--Hb_015175_070 Hb_002092_060 Hb_002092_060 Hb_000724_060--Hb_002092_060 Hb_000724_060--Hb_005127_050 Hb_007122_020 Hb_007122_020 Hb_000724_060--Hb_007122_020 Hb_001110_060 Hb_001110_060 Hb_001408_080--Hb_001110_060 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001427_100 Hb_001427_100 Hb_001408_080--Hb_001427_100 Hb_005111_020 Hb_005111_020 Hb_001408_080--Hb_005111_020 Hb_001408_080--Hb_012132_050 Hb_036520_030 Hb_036520_030 Hb_001408_080--Hb_036520_030 Hb_007904_280 Hb_007904_280 Hb_012132_050--Hb_007904_280 Hb_009783_010 Hb_009783_010 Hb_012132_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_012132_050--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_012132_050--Hb_001136_160 Hb_003466_010 Hb_003466_010 Hb_012132_050--Hb_003466_010 Hb_000964_040--Hb_150299_010 Hb_000964_040--Hb_007122_020 Hb_000964_040--Hb_009783_010 Hb_001789_230 Hb_001789_230 Hb_000964_040--Hb_001789_230 Hb_000964_040--Hb_012132_050 Hb_150299_010--Hb_005127_050 Hb_150299_010--Hb_007122_020 Hb_000261_070 Hb_000261_070 Hb_150299_010--Hb_000261_070 Hb_150299_010--Hb_001789_230 Hb_005127_050--Hb_009079_020 Hb_005127_050--Hb_007122_020 Hb_003175_120 Hb_003175_120 Hb_005127_050--Hb_003175_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.451184 0.908549 3.07316 0.0664573 0.0258142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0167508 0.849229

CAGE analysis