Hb_004607_070

Information

Type -
Description -
Location Contig4607: 45705-50235
Sequence    

Annotation

kegg
ID rcu:RCOM_1577360
description integral membrane protein, putative
nr
ID XP_002513470.1
description integral membrane protein, putative [Ricinus communis]
swissprot
ID Q940Q3
description Zinc transporter ZTP29 OS=Arabidopsis thaliana GN=ZTP29 PE=2 SV=1
trembl
ID B9RIA1
description Integral membrane protein, putative OS=Ricinus communis GN=RCOM_1577360 PE=4 SV=1
Gene Ontology
ID GO:0016020
description zinc transporter ztp29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43705: 45809-46933 , PASA_asmbl_43706: 46709-46884 , PASA_asmbl_43707: 48006-48259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_070 0.0 - - integral membrane protein, putative [Ricinus communis]
2 Hb_000046_170 0.0764377629 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
3 Hb_000035_390 0.0847157147 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
4 Hb_020390_010 0.0967465282 - - PREDICTED: expansin-A13 [Jatropha curcas]
5 Hb_000928_190 0.096795758 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
6 Hb_005648_010 0.0997760379 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
7 Hb_009711_050 0.1002210286 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
8 Hb_000165_080 0.1051626764 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
9 Hb_032920_070 0.1051898025 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
10 Hb_132880_040 0.1055907122 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
11 Hb_001951_060 0.1067606016 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
12 Hb_000406_150 0.108246237 - - sodium/hydrogen exchanger, putative [Ricinus communis]
13 Hb_001301_280 0.108529712 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000800_090 0.109022921 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
15 Hb_003207_020 0.1114594047 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
16 Hb_033152_070 0.1123085291 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
17 Hb_010042_020 0.1133642316 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
18 Hb_001486_040 0.1151005752 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
19 Hb_005701_120 0.1161139243 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
20 Hb_012022_050 0.1191163159 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004607_070 Hb_004607_070 Hb_000046_170 Hb_000046_170 Hb_004607_070--Hb_000046_170 Hb_000035_390 Hb_000035_390 Hb_004607_070--Hb_000035_390 Hb_020390_010 Hb_020390_010 Hb_004607_070--Hb_020390_010 Hb_000928_190 Hb_000928_190 Hb_004607_070--Hb_000928_190 Hb_005648_010 Hb_005648_010 Hb_004607_070--Hb_005648_010 Hb_009711_050 Hb_009711_050 Hb_004607_070--Hb_009711_050 Hb_000367_090 Hb_000367_090 Hb_000046_170--Hb_000367_090 Hb_000179_270 Hb_000179_270 Hb_000046_170--Hb_000179_270 Hb_028487_160 Hb_028487_160 Hb_000046_170--Hb_028487_160 Hb_000087_070 Hb_000087_070 Hb_000046_170--Hb_000087_070 Hb_000165_080 Hb_000165_080 Hb_000046_170--Hb_000165_080 Hb_132880_040 Hb_132880_040 Hb_000035_390--Hb_132880_040 Hb_000035_390--Hb_005648_010 Hb_000185_220 Hb_000185_220 Hb_000035_390--Hb_000185_220 Hb_000035_390--Hb_000046_170 Hb_000035_390--Hb_000367_090 Hb_032920_070 Hb_032920_070 Hb_020390_010--Hb_032920_070 Hb_005701_120 Hb_005701_120 Hb_020390_010--Hb_005701_120 Hb_000288_020 Hb_000288_020 Hb_020390_010--Hb_000288_020 Hb_002110_100 Hb_002110_100 Hb_020390_010--Hb_002110_100 Hb_006683_070 Hb_006683_070 Hb_020390_010--Hb_006683_070 Hb_020390_010--Hb_000046_170 Hb_033152_070 Hb_033152_070 Hb_000928_190--Hb_033152_070 Hb_000258_240 Hb_000258_240 Hb_000928_190--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000928_190--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_000928_190--Hb_010042_020 Hb_001481_150 Hb_001481_150 Hb_000928_190--Hb_001481_150 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_004880_150 Hb_004880_150 Hb_005648_010--Hb_004880_150 Hb_000115_150 Hb_000115_150 Hb_005648_010--Hb_000115_150 Hb_000025_190 Hb_000025_190 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_003207_020 Hb_003207_020 Hb_009711_050--Hb_003207_020 Hb_009711_050--Hb_000928_190 Hb_002611_010 Hb_002611_010 Hb_009711_050--Hb_002611_010 Hb_009711_050--Hb_033152_070 Hb_000613_070 Hb_000613_070 Hb_009711_050--Hb_000613_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.05393 9.10456 7.76202 27.4668 5.07117 4.87759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8314 11.7304 5.88414 16.9268 17.9472

CAGE analysis