Hb_004607_100

Information

Type -
Description -
Location Contig4607: 64988-65612
Sequence    

Annotation

kegg
ID fve:101294611
description putative ribonuclease H protein At1g65750-like
nr
ID XP_008383144.1
description PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
swissprot
ID -
description -
trembl
ID I1IKJ6
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI4G14180 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_100 0.0 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
2 Hb_000230_070 0.2061298915 - - Galactose oxidase precursor, putative [Ricinus communis]
3 Hb_003228_070 0.2065271211 - - conserved hypothetical protein [Ricinus communis]
4 Hb_143643_010 0.2174420648 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
5 Hb_002345_080 0.2222151264 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000111_220 0.2426621284 - - unnamed protein product [Vitis vinifera]
7 Hb_004800_050 0.2537694688 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
8 Hb_001369_310 0.2621659321 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_001638_100 0.2651413593 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
10 Hb_000173_200 0.2662527088 - - conserved hypothetical protein [Ricinus communis]
11 Hb_040948_020 0.2701757161 - - -
12 Hb_136850_040 0.2846852698 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_002374_330 0.2853387443 - - -
14 Hb_000184_080 0.2958931362 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
15 Hb_001501_040 0.2975787766 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
16 Hb_000836_590 0.298038955 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
17 Hb_003405_040 0.2999683541 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
18 Hb_001649_120 0.3017193857 - - -
19 Hb_003939_020 0.3245925856 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
20 Hb_004204_180 0.3312622344 - - -

Gene co-expression network

sample Hb_004607_100 Hb_004607_100 Hb_000230_070 Hb_000230_070 Hb_004607_100--Hb_000230_070 Hb_003228_070 Hb_003228_070 Hb_004607_100--Hb_003228_070 Hb_143643_010 Hb_143643_010 Hb_004607_100--Hb_143643_010 Hb_002345_080 Hb_002345_080 Hb_004607_100--Hb_002345_080 Hb_000111_220 Hb_000111_220 Hb_004607_100--Hb_000111_220 Hb_004800_050 Hb_004800_050 Hb_004607_100--Hb_004800_050 Hb_000230_070--Hb_143643_010 Hb_001369_310 Hb_001369_310 Hb_000230_070--Hb_001369_310 Hb_001638_100 Hb_001638_100 Hb_000230_070--Hb_001638_100 Hb_040948_020 Hb_040948_020 Hb_000230_070--Hb_040948_020 Hb_000230_070--Hb_000111_220 Hb_000173_200 Hb_000173_200 Hb_003228_070--Hb_000173_200 Hb_136850_040 Hb_136850_040 Hb_003228_070--Hb_136850_040 Hb_003228_070--Hb_002345_080 Hb_003939_020 Hb_003939_020 Hb_003228_070--Hb_003939_020 Hb_000836_590 Hb_000836_590 Hb_003228_070--Hb_000836_590 Hb_143643_010--Hb_001369_310 Hb_143643_010--Hb_000111_220 Hb_151497_010 Hb_151497_010 Hb_143643_010--Hb_151497_010 Hb_001907_130 Hb_001907_130 Hb_143643_010--Hb_001907_130 Hb_002345_080--Hb_040948_020 Hb_002345_080--Hb_004800_050 Hb_002345_080--Hb_001638_100 Hb_001501_040 Hb_001501_040 Hb_002345_080--Hb_001501_040 Hb_000111_220--Hb_000836_590 Hb_000893_050 Hb_000893_050 Hb_000111_220--Hb_000893_050 Hb_004785_120 Hb_004785_120 Hb_000111_220--Hb_004785_120 Hb_001021_110 Hb_001021_110 Hb_000111_220--Hb_001021_110 Hb_055147_010 Hb_055147_010 Hb_000111_220--Hb_055147_010 Hb_000438_040 Hb_000438_040 Hb_000111_220--Hb_000438_040 Hb_004800_050--Hb_040948_020 Hb_004800_050--Hb_001638_100 Hb_004800_050--Hb_001501_040 Hb_000123_100 Hb_000123_100 Hb_004800_050--Hb_000123_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.228923 0.200762 0 0.125473 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0325444 0

CAGE analysis