Hb_004607_140

Information

Type transcription factor
Description TF Family: AP2
Location Contig4607: 80557-87758
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20470g
description POPTRDRAFT_758079; ovule development family protein
nr
ID XP_011042075.1
description PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
swissprot
ID Q5YGP7
description AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1
trembl
ID B9GW95
description Ovule development family protein OS=Populus trichocarpa GN=POPTR_0003s20470g PE=4 SV=1
Gene Ontology
ID GO:0003677
description ap2-like ethylene-responsive transcription factor plt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43722: 80352-82374 , PASA_asmbl_43723: 81492-81593 , PASA_asmbl_43724: 81882-82012
cDNA
(Sanger)
(ID:Location)		 018_A17.ab1: 80474-82296

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_140 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
2 Hb_000272_100 0.0783351575 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
3 Hb_157854_010 0.0851557329 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
4 Hb_004204_030 0.0870349853 - - unknown [Populus trichocarpa]
5 Hb_000163_200 0.0885438577 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
6 Hb_006824_020 0.0923893642 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
7 Hb_000732_260 0.094869332 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
8 Hb_017895_050 0.0954375498 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
9 Hb_003057_050 0.0966933389 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
10 Hb_001623_240 0.0968447646 - - hypothetical protein VITISV_004933 [Vitis vinifera]
11 Hb_118977_020 0.099351049 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
12 Hb_003086_110 0.0996133028 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
13 Hb_001951_110 0.1026977578 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
14 Hb_003185_020 0.1053098646 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
15 Hb_000282_060 0.1058049169 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
16 Hb_006569_020 0.1084858047 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
17 Hb_027892_060 0.1087719209 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
18 Hb_001767_100 0.1095256159 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
19 Hb_010449_020 0.1109180761 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
20 Hb_010883_210 0.1113527957 - - PREDICTED: selenoprotein K [Jatropha curcas]

Gene co-expression network

sample Hb_004607_140 Hb_004607_140 Hb_000272_100 Hb_000272_100 Hb_004607_140--Hb_000272_100 Hb_157854_010 Hb_157854_010 Hb_004607_140--Hb_157854_010 Hb_004204_030 Hb_004204_030 Hb_004607_140--Hb_004204_030 Hb_000163_200 Hb_000163_200 Hb_004607_140--Hb_000163_200 Hb_006824_020 Hb_006824_020 Hb_004607_140--Hb_006824_020 Hb_000732_260 Hb_000732_260 Hb_004607_140--Hb_000732_260 Hb_033491_010 Hb_033491_010 Hb_000272_100--Hb_033491_010 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_000272_100--Hb_000732_260 Hb_003086_110 Hb_003086_110 Hb_000272_100--Hb_003086_110 Hb_003086_020 Hb_003086_020 Hb_000272_100--Hb_003086_020 Hb_002762_060 Hb_002762_060 Hb_157854_010--Hb_002762_060 Hb_118977_020 Hb_118977_020 Hb_157854_010--Hb_118977_020 Hb_157854_010--Hb_003086_020 Hb_003185_020 Hb_003185_020 Hb_157854_010--Hb_003185_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_001804_040 Hb_001804_040 Hb_004204_030--Hb_001804_040 Hb_001951_110 Hb_001951_110 Hb_004204_030--Hb_001951_110 Hb_000866_300 Hb_000866_300 Hb_004204_030--Hb_000866_300 Hb_006569_020 Hb_006569_020 Hb_004204_030--Hb_006569_020 Hb_000392_270 Hb_000392_270 Hb_004204_030--Hb_000392_270 Hb_001514_020 Hb_001514_020 Hb_004204_030--Hb_001514_020 Hb_004242_080 Hb_004242_080 Hb_000163_200--Hb_004242_080 Hb_000163_200--Hb_001951_110 Hb_000163_200--Hb_157854_010 Hb_000417_110 Hb_000417_110 Hb_000163_200--Hb_000417_110 Hb_000479_180 Hb_000479_180 Hb_000163_200--Hb_000479_180 Hb_006775_080 Hb_006775_080 Hb_006824_020--Hb_006775_080 Hb_001767_100 Hb_001767_100 Hb_006824_020--Hb_001767_100 Hb_006824_020--Hb_000732_260 Hb_021068_050 Hb_021068_050 Hb_006824_020--Hb_021068_050 Hb_000676_220 Hb_000676_220 Hb_006824_020--Hb_000676_220 Hb_006824_020--Hb_006569_020 Hb_000732_260--Hb_033491_010 Hb_000282_060 Hb_000282_060 Hb_000732_260--Hb_000282_060 Hb_002249_140 Hb_002249_140 Hb_000732_260--Hb_002249_140 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.4632 13.0122 6.74992 7.20025 53.3614 42.5346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.5404 47.9744 24.9212 15.7868 3.64474

CAGE analysis