Hb_004607_160

Information

Type -
Description -
Location Contig4607: 107228-120190
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05560g
description POPTRDRAFT_814847; hypothetical protein
nr
ID XP_011037839.1
description PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GM82
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s05560g PE=4 SV=1
Gene Ontology
ID GO:0046556
description proline--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43727: 107458-113902 , PASA_asmbl_43728: 118229-119007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_160 0.0 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
2 Hb_000836_030 0.0700774326 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
3 Hb_000130_480 0.0799941186 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
4 Hb_002635_010 0.0820229686 - - homogentisate phytyl transferase [Hevea brasiliensis]
5 Hb_144449_010 0.0882601111 - - Potassium transporter, putative [Ricinus communis]
6 Hb_005332_050 0.0894301 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
7 Hb_007850_110 0.0904916035 - - MADS-box transcription factor 3 [Hevea brasiliensis]
8 Hb_006198_040 0.105755774 - - conserved hypothetical protein [Ricinus communis]
9 Hb_014967_020 0.1074770028 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000162_200 0.1075136482 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
11 Hb_007894_080 0.1126608886 - - conserved hypothetical protein [Ricinus communis]
12 Hb_167211_010 0.1141436409 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
13 Hb_002095_020 0.1147761836 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
14 Hb_003266_010 0.1165106276 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
15 Hb_143629_200 0.1176049855 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
16 Hb_001629_050 0.1185149901 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_017358_020 0.1196040324 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
18 Hb_000868_130 0.120429188 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
19 Hb_006469_090 0.1217100175 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
20 Hb_001278_090 0.1225685211 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]

Gene co-expression network

sample Hb_004607_160 Hb_004607_160 Hb_000836_030 Hb_000836_030 Hb_004607_160--Hb_000836_030 Hb_000130_480 Hb_000130_480 Hb_004607_160--Hb_000130_480 Hb_002635_010 Hb_002635_010 Hb_004607_160--Hb_002635_010 Hb_144449_010 Hb_144449_010 Hb_004607_160--Hb_144449_010 Hb_005332_050 Hb_005332_050 Hb_004607_160--Hb_005332_050 Hb_007850_110 Hb_007850_110 Hb_004607_160--Hb_007850_110 Hb_000784_060 Hb_000784_060 Hb_000836_030--Hb_000784_060 Hb_006198_040 Hb_006198_040 Hb_000836_030--Hb_006198_040 Hb_000836_030--Hb_000130_480 Hb_002095_020 Hb_002095_020 Hb_000836_030--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_000836_030--Hb_001369_390 Hb_000130_480--Hb_002635_010 Hb_000130_480--Hb_006198_040 Hb_124579_020 Hb_124579_020 Hb_000130_480--Hb_124579_020 Hb_003142_080 Hb_003142_080 Hb_000130_480--Hb_003142_080 Hb_000380_140 Hb_000380_140 Hb_002635_010--Hb_000380_140 Hb_002635_010--Hb_124579_020 Hb_002635_010--Hb_007850_110 Hb_002635_010--Hb_003142_080 Hb_000473_100 Hb_000473_100 Hb_144449_010--Hb_000473_100 Hb_003266_010 Hb_003266_010 Hb_144449_010--Hb_003266_010 Hb_010557_020 Hb_010557_020 Hb_144449_010--Hb_010557_020 Hb_152980_020 Hb_152980_020 Hb_144449_010--Hb_152980_020 Hb_000856_200 Hb_000856_200 Hb_144449_010--Hb_000856_200 Hb_167211_010 Hb_167211_010 Hb_005332_050--Hb_167211_010 Hb_005332_050--Hb_000130_480 Hb_005332_050--Hb_007850_110 Hb_005332_050--Hb_000836_030 Hb_001778_040 Hb_001778_040 Hb_005332_050--Hb_001778_040 Hb_006469_090 Hb_006469_090 Hb_007850_110--Hb_006469_090 Hb_017098_050 Hb_017098_050 Hb_007850_110--Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_007850_110--Hb_001109_130 Hb_007850_110--Hb_000130_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171274 7.91497 13.8504 22.252 0.0732997 0.0597614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101961 0.0343903 0.132613 15.3167 29.53

CAGE analysis