Hb_004611_040

Information

Type -
Description -
Location Contig4611: 56574-58817
Sequence    

Annotation

kegg
ID rcu:RCOM_0963880
description RNA polymerase sigma factor rpoD, putative
nr
ID XP_012065613.1
description PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9ZSL6
description RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana GN=SIGD PE=2 SV=1
trembl
ID A0A067L8J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16865 PE=4 SV=1
Gene Ontology
ID GO:0009507
description rna polymerase sigma factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43735: 56986-58722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004611_040 0.0 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_003427_080 0.1304789409 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
3 Hb_002835_090 0.1449612755 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
4 Hb_001155_020 0.1452023737 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
5 Hb_000667_140 0.1486068634 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
6 Hb_000402_170 0.1545472191 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
7 Hb_001338_160 0.1553266835 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
8 Hb_072212_010 0.1563876898 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
9 Hb_000038_020 0.1660133445 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
10 Hb_000395_090 0.1738024195 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
11 Hb_000053_120 0.1745060676 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
12 Hb_000118_090 0.1750416993 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_000186_110 0.1757513232 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
14 Hb_000029_330 0.1826009038 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
15 Hb_003494_030 0.1853877339 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
16 Hb_024399_020 0.1878170155 - - electron transporter, putative [Ricinus communis]
17 Hb_032733_010 0.1908773087 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
18 Hb_001266_160 0.1910773891 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
19 Hb_002783_070 0.1910844095 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
20 Hb_001907_080 0.1912893662 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]

Gene co-expression network

sample Hb_004611_040 Hb_004611_040 Hb_003427_080 Hb_003427_080 Hb_004611_040--Hb_003427_080 Hb_002835_090 Hb_002835_090 Hb_004611_040--Hb_002835_090 Hb_001155_020 Hb_001155_020 Hb_004611_040--Hb_001155_020 Hb_000667_140 Hb_000667_140 Hb_004611_040--Hb_000667_140 Hb_000402_170 Hb_000402_170 Hb_004611_040--Hb_000402_170 Hb_001338_160 Hb_001338_160 Hb_004611_040--Hb_001338_160 Hb_003427_080--Hb_000402_170 Hb_000053_120 Hb_000053_120 Hb_003427_080--Hb_000053_120 Hb_000038_020 Hb_000038_020 Hb_003427_080--Hb_000038_020 Hb_003427_080--Hb_000667_140 Hb_003077_130 Hb_003077_130 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_011900_020 Hb_011900_020 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_001155_020--Hb_001338_160 Hb_072212_010 Hb_072212_010 Hb_001155_020--Hb_072212_010 Hb_003963_040 Hb_003963_040 Hb_001155_020--Hb_003963_040 Hb_001155_020--Hb_002835_090 Hb_001338_150 Hb_001338_150 Hb_001155_020--Hb_001338_150 Hb_000667_140--Hb_000038_020 Hb_002304_180 Hb_002304_180 Hb_000667_140--Hb_002304_180 Hb_003494_030 Hb_003494_030 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000667_140--Hb_000359_070 Hb_036790_120 Hb_036790_120 Hb_000402_170--Hb_036790_120 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_000402_170--Hb_002304_180 Hb_001338_160--Hb_003963_040 Hb_001338_160--Hb_001338_150 Hb_162094_010 Hb_162094_010 Hb_001338_160--Hb_162094_010 Hb_003032_090 Hb_003032_090 Hb_001338_160--Hb_003032_090 Hb_001338_160--Hb_002835_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2378 0.188178 4.53828 2.04756 1.96755 1.80013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.517267 0.352671 0.406342 0.954105 17.2447

CAGE analysis