Hb_004617_010

Information

Type -
Description -
Location Contig4617: 46256-51094
Sequence    

Annotation

kegg
ID rcu:RCOM_0845390
description multidrug resistance pump, putative
nr
ID XP_006484781.1
description PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9SY89
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0845390 PE=3 SV=1
Gene Ontology
ID GO:0016021
description multidrug resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43745: 46600-47242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004617_010 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
2 Hb_002837_150 0.0988692905 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
3 Hb_011344_050 0.0994216026 - - PREDICTED: 21 kDa protein [Jatropha curcas]
4 Hb_159791_010 0.1031899531 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
5 Hb_004757_010 0.1047308589 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
6 Hb_001141_430 0.1073822769 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
7 Hb_145975_010 0.10790625 - - cytochrome P450, putative [Ricinus communis]
8 Hb_003212_030 0.108874136 - - multidrug resistance pump, putative [Ricinus communis]
9 Hb_103632_010 0.1124771655 - - triacylglycerol lipase, putative [Ricinus communis]
10 Hb_000959_170 0.1188426733 - - Cell division protein kinase 7, putative [Ricinus communis]
11 Hb_006618_100 0.1200232673 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
12 Hb_000349_280 0.1207187024 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001343_060 0.1217635881 - - Cytochrome P450 [Theobroma cacao]
14 Hb_000025_150 0.1229052758 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
15 Hb_000206_270 0.1239504761 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_002277_020 0.1252701857 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
17 Hb_032299_020 0.1262248489 - - tonoplast intrinsic protein, putative [Ricinus communis]
18 Hb_000378_030 0.1265917454 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005245_030 0.1271904614 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
20 Hb_002835_120 0.1284698824 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]

Gene co-expression network

sample Hb_004617_010 Hb_004617_010 Hb_002837_150 Hb_002837_150 Hb_004617_010--Hb_002837_150 Hb_011344_050 Hb_011344_050 Hb_004617_010--Hb_011344_050 Hb_159791_010 Hb_159791_010 Hb_004617_010--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_004617_010--Hb_004757_010 Hb_001141_430 Hb_001141_430 Hb_004617_010--Hb_001141_430 Hb_145975_010 Hb_145975_010 Hb_004617_010--Hb_145975_010 Hb_103632_010 Hb_103632_010 Hb_002837_150--Hb_103632_010 Hb_001141_010 Hb_001141_010 Hb_002837_150--Hb_001141_010 Hb_001269_440 Hb_001269_440 Hb_002837_150--Hb_001269_440 Hb_003212_030 Hb_003212_030 Hb_002837_150--Hb_003212_030 Hb_002835_120 Hb_002835_120 Hb_002837_150--Hb_002835_120 Hb_011344_050--Hb_004757_010 Hb_027411_030 Hb_027411_030 Hb_011344_050--Hb_027411_030 Hb_010863_020 Hb_010863_020 Hb_011344_050--Hb_010863_020 Hb_006618_100 Hb_006618_100 Hb_011344_050--Hb_006618_100 Hb_013399_060 Hb_013399_060 Hb_011344_050--Hb_013399_060 Hb_001296_010 Hb_001296_010 Hb_011344_050--Hb_001296_010 Hb_159791_010--Hb_001141_430 Hb_159791_010--Hb_004757_010 Hb_001343_060 Hb_001343_060 Hb_159791_010--Hb_001343_060 Hb_000959_170 Hb_000959_170 Hb_159791_010--Hb_000959_170 Hb_000816_170 Hb_000816_170 Hb_159791_010--Hb_000816_170 Hb_000087_160 Hb_000087_160 Hb_159791_010--Hb_000087_160 Hb_004757_010--Hb_001343_060 Hb_004757_010--Hb_001141_430 Hb_004757_010--Hb_027411_030 Hb_001712_010 Hb_001712_010 Hb_004757_010--Hb_001712_010 Hb_001141_430--Hb_001343_060 Hb_011344_110 Hb_011344_110 Hb_001141_430--Hb_011344_110 Hb_001141_430--Hb_000816_170 Hb_001141_430--Hb_001712_010 Hb_145975_010--Hb_006618_100 Hb_145975_010--Hb_004757_010 Hb_145975_010--Hb_001343_060 Hb_145975_010--Hb_027411_030 Hb_145975_010--Hb_001141_430 Hb_001269_430 Hb_001269_430 Hb_145975_010--Hb_001269_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0401471 1.0551 0.312801 8.46645 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0408146 0.0321053 0 0.321556 0.597825

CAGE analysis