Hb_004619_030

Information

Type -
Description -
Location Contig4619: 22743-28872
Sequence    

Annotation

kegg
ID tcc:TCM_006385
description Oxidoreductase, putative
nr
ID XP_012071337.1
description PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
swissprot
ID Q66JG8
description RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1
trembl
ID A0A067L300
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05032 PE=4 SV=1
Gene Ontology
ID GO:0016706
description rna demethylase alkbh5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43750: 22843-28499 , PASA_asmbl_43751: 27651-28813 , PASA_asmbl_43752: 26195-26420 , PASA_asmbl_43753: 23988-24116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004619_030 0.0 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
2 Hb_003163_020 0.047163013 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
3 Hb_000347_070 0.0547319132 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000011_200 0.0573428325 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
5 Hb_011930_160 0.0586254958 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
6 Hb_004410_030 0.05916211 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000617_180 0.0594913335 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
8 Hb_003158_010 0.060314911 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
9 Hb_003025_110 0.062834741 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
10 Hb_006634_070 0.065835741 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
11 Hb_002025_020 0.0683599456 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
12 Hb_000225_040 0.070062592 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
13 Hb_001357_250 0.070661421 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
14 Hb_002835_370 0.070773615 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
15 Hb_005269_070 0.0720435258 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
16 Hb_001409_020 0.0720755685 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
17 Hb_023344_120 0.0726637922 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
18 Hb_001141_020 0.0727235757 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_000462_060 0.0740798536 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
20 Hb_000958_140 0.0744555568 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]

Gene co-expression network

sample Hb_004619_030 Hb_004619_030 Hb_003163_020 Hb_003163_020 Hb_004619_030--Hb_003163_020 Hb_000347_070 Hb_000347_070 Hb_004619_030--Hb_000347_070 Hb_000011_200 Hb_000011_200 Hb_004619_030--Hb_000011_200 Hb_011930_160 Hb_011930_160 Hb_004619_030--Hb_011930_160 Hb_004410_030 Hb_004410_030 Hb_004619_030--Hb_004410_030 Hb_000617_180 Hb_000617_180 Hb_004619_030--Hb_000617_180 Hb_003163_020--Hb_011930_160 Hb_003163_020--Hb_000347_070 Hb_003163_020--Hb_000617_180 Hb_000317_470 Hb_000317_470 Hb_003163_020--Hb_000317_470 Hb_003163_020--Hb_000011_200 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_000225_040 Hb_000225_040 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_001946_010 Hb_001946_010 Hb_011930_160--Hb_001946_010 Hb_003025_110 Hb_003025_110 Hb_011930_160--Hb_003025_110 Hb_011930_160--Hb_000193_190 Hb_103012_010 Hb_103012_010 Hb_011930_160--Hb_103012_010 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_004410_030--Hb_003025_110 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000617_180--Hb_000347_070 Hb_000617_180--Hb_002375_010 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5784 7.83823 8.27807 8.14908 12.6668 11.2478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4518 8.48867 11.9333 12.4819 9.082

CAGE analysis