Hb_004619_070

Information

Type -
Description -
Location Contig4619: 60729-61735
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00550g
description POPTRDRAFT_831745; hypothetical protein
nr
ID XP_002308752.1
description hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P7U2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s00550g PE=2 SV=1
Gene Ontology
ID GO:0005886
description maternal effect embryo arrest 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004619_070 0.0 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
2 Hb_001776_030 0.1165104936 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003872_010 0.1723503227 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]
4 Hb_000270_870 0.1725867733 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
5 Hb_000413_070 0.1798482509 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004374_080 0.1809685718 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
7 Hb_002804_020 0.1832617964 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
8 Hb_002301_310 0.1959152496 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
9 Hb_028207_060 0.2038886478 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
10 Hb_005048_140 0.2076103443 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011344_160 0.2079051017 - - PREDICTED: primary amine oxidase [Jatropha curcas]
12 Hb_000172_540 0.2094865688 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
13 Hb_000139_230 0.2103945852 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
14 Hb_013358_080 0.2108062192 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
15 Hb_074197_020 0.2140701637 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
16 Hb_003998_010 0.2141359934 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
17 Hb_000157_200 0.2146039786 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
18 Hb_000203_230 0.214899793 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
19 Hb_000815_130 0.2152349948 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
20 Hb_029904_020 0.217649874 - - hypothetical protein JCGZ_06227 [Jatropha curcas]

Gene co-expression network

sample Hb_004619_070 Hb_004619_070 Hb_001776_030 Hb_001776_030 Hb_004619_070--Hb_001776_030 Hb_003872_010 Hb_003872_010 Hb_004619_070--Hb_003872_010 Hb_000270_870 Hb_000270_870 Hb_004619_070--Hb_000270_870 Hb_000413_070 Hb_000413_070 Hb_004619_070--Hb_000413_070 Hb_004374_080 Hb_004374_080 Hb_004619_070--Hb_004374_080 Hb_002804_020 Hb_002804_020 Hb_004619_070--Hb_002804_020 Hb_001776_030--Hb_000270_870 Hb_001776_030--Hb_000413_070 Hb_002471_110 Hb_002471_110 Hb_001776_030--Hb_002471_110 Hb_001776_030--Hb_002804_020 Hb_001776_030--Hb_003872_010 Hb_003872_010--Hb_004374_080 Hb_007803_060 Hb_007803_060 Hb_003872_010--Hb_007803_060 Hb_003872_010--Hb_000270_870 Hb_002000_060 Hb_002000_060 Hb_003872_010--Hb_002000_060 Hb_000661_110 Hb_000661_110 Hb_003872_010--Hb_000661_110 Hb_147505_010 Hb_147505_010 Hb_003872_010--Hb_147505_010 Hb_000270_870--Hb_002804_020 Hb_001488_340 Hb_001488_340 Hb_000270_870--Hb_001488_340 Hb_008511_060 Hb_008511_060 Hb_000270_870--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000270_870--Hb_010053_040 Hb_000630_030 Hb_000630_030 Hb_000413_070--Hb_000630_030 Hb_001349_030 Hb_001349_030 Hb_000413_070--Hb_001349_030 Hb_004355_040 Hb_004355_040 Hb_000413_070--Hb_004355_040 Hb_000588_080 Hb_000588_080 Hb_000413_070--Hb_000588_080 Hb_001059_130 Hb_001059_130 Hb_000413_070--Hb_001059_130 Hb_000580_030 Hb_000580_030 Hb_000413_070--Hb_000580_030 Hb_004374_080--Hb_002000_060 Hb_000270_160 Hb_000270_160 Hb_004374_080--Hb_000270_160 Hb_000139_230 Hb_000139_230 Hb_004374_080--Hb_000139_230 Hb_012404_070 Hb_012404_070 Hb_004374_080--Hb_012404_070 Hb_000566_100 Hb_000566_100 Hb_004374_080--Hb_000566_100 Hb_000733_050 Hb_000733_050 Hb_002804_020--Hb_000733_050 Hb_002541_020 Hb_002541_020 Hb_002804_020--Hb_002541_020 Hb_029866_100 Hb_029866_100 Hb_002804_020--Hb_029866_100 Hb_074449_010 Hb_074449_010 Hb_002804_020--Hb_074449_010 Hb_002804_020--Hb_000413_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.1438 17.1096 14.1314 32.6693 6.55589 29.9905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3828 2.67981 4.09166 10.2826 33.2898

CAGE analysis