Hb_004619_090

Information

Type -
Description -
Location Contig4619: 66301-67814
Sequence    

Annotation

kegg
ID rcu:RCOM_0066480
description hypothetical protein
nr
ID XP_002531427.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SAC4
description F-box protein At1g10780 OS=Arabidopsis thaliana GN=At1g10780 PE=2 SV=1
trembl
ID B9SZK8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0066480 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at1g10780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43765: 67564-68750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004619_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000418_040 0.0992920339 - - hypothetical protein RCOM_0377590 [Ricinus communis]
3 Hb_003813_110 0.1050913942 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000441_210 0.1158389116 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
5 Hb_118282_020 0.1220395006 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
6 Hb_101133_050 0.133549228 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
7 Hb_001390_040 0.1350598144 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
8 Hb_000567_290 0.1375863056 - - hypothetical protein RCOM_0303940 [Ricinus communis]
9 Hb_007474_020 0.1419147627 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_014497_070 0.1419272358 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
11 Hb_001307_150 0.1421612167 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_010705_040 0.142470509 - - PREDICTED: kinesin-4 [Jatropha curcas]
13 Hb_000661_150 0.1426119295 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
14 Hb_021576_050 0.1431729919 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
15 Hb_072201_010 0.1435456392 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
16 Hb_080952_060 0.1474211223 - - PREDICTED: patellin-4 [Populus euphratica]
17 Hb_001688_100 0.1501292216 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
18 Hb_001168_030 0.1508277156 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
19 Hb_000527_020 0.1513607828 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
20 Hb_001584_360 0.1521036536 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]

Gene co-expression network

sample Hb_004619_090 Hb_004619_090 Hb_000418_040 Hb_000418_040 Hb_004619_090--Hb_000418_040 Hb_003813_110 Hb_003813_110 Hb_004619_090--Hb_003813_110 Hb_000441_210 Hb_000441_210 Hb_004619_090--Hb_000441_210 Hb_118282_020 Hb_118282_020 Hb_004619_090--Hb_118282_020 Hb_101133_050 Hb_101133_050 Hb_004619_090--Hb_101133_050 Hb_001390_040 Hb_001390_040 Hb_004619_090--Hb_001390_040 Hb_000418_040--Hb_118282_020 Hb_000661_150 Hb_000661_150 Hb_000418_040--Hb_000661_150 Hb_059226_010 Hb_059226_010 Hb_000418_040--Hb_059226_010 Hb_001565_090 Hb_001565_090 Hb_000418_040--Hb_001565_090 Hb_007474_020 Hb_007474_020 Hb_000418_040--Hb_007474_020 Hb_000567_290 Hb_000567_290 Hb_003813_110--Hb_000567_290 Hb_003813_110--Hb_000661_150 Hb_003813_110--Hb_000441_210 Hb_002311_090 Hb_002311_090 Hb_003813_110--Hb_002311_090 Hb_003813_110--Hb_000418_040 Hb_004963_020 Hb_004963_020 Hb_000441_210--Hb_004963_020 Hb_004102_090 Hb_004102_090 Hb_000441_210--Hb_004102_090 Hb_010705_040 Hb_010705_040 Hb_000441_210--Hb_010705_040 Hb_001454_180 Hb_001454_180 Hb_000441_210--Hb_001454_180 Hb_002205_180 Hb_002205_180 Hb_000441_210--Hb_002205_180 Hb_001168_030 Hb_001168_030 Hb_000441_210--Hb_001168_030 Hb_004774_080 Hb_004774_080 Hb_118282_020--Hb_004774_080 Hb_000527_020 Hb_000527_020 Hb_118282_020--Hb_000527_020 Hb_005398_050 Hb_005398_050 Hb_118282_020--Hb_005398_050 Hb_118282_020--Hb_007474_020 Hb_001307_150 Hb_001307_150 Hb_118282_020--Hb_001307_150 Hb_101133_050--Hb_002311_090 Hb_101133_050--Hb_001307_150 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_001390_040--Hb_001307_150 Hb_001390_040--Hb_000527_020 Hb_000890_140 Hb_000890_140 Hb_001390_040--Hb_000890_140 Hb_000856_390 Hb_000856_390 Hb_001390_040--Hb_000856_390 Hb_003847_060 Hb_003847_060 Hb_001390_040--Hb_003847_060 Hb_001390_040--Hb_007474_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0376649 0.058495 6.64069 4.15229 0.0471332 0.0642469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0765606 0.271017 0.112308 0.301309 0.187455

CAGE analysis