Hb_004625_020

Information

Type -
Description -
Location Contig4625: 38381-46575
Sequence    

Annotation

kegg
ID tcc:TCM_007245
description Xanthine/uracil permease family protein isoform 1
nr
ID XP_012093142.1
description PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
swissprot
ID P93039
description Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2
trembl
ID A0A061E884
description Xanthine/uracil permease family protein isoform 1 OS=Theobroma cacao GN=TCM_007245 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004625_020 0.0 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
2 Hb_002171_050 0.0812047432 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
3 Hb_133492_010 0.0816644398 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_180980_010 0.0966820071 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
5 Hb_005183_070 0.099784958 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
6 Hb_142056_010 0.1036457852 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
7 Hb_000137_050 0.1042948795 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000864_050 0.1043358529 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000449_070 0.1062202451 - - unnamed protein product [Vitis vinifera]
10 Hb_002000_100 0.1106895328 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
11 Hb_000368_040 0.1118867547 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002384_030 0.1127552228 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001454_350 0.1140685665 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
14 Hb_005391_050 0.1168940917 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
15 Hb_006386_010 0.1178729078 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
16 Hb_008731_010 0.1179086564 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
17 Hb_000020_140 0.1193290648 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
18 Hb_049453_010 0.1195248376 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_000197_260 0.1201309833 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
20 Hb_152914_010 0.1210471066 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004625_020 Hb_004625_020 Hb_002171_050 Hb_002171_050 Hb_004625_020--Hb_002171_050 Hb_133492_010 Hb_133492_010 Hb_004625_020--Hb_133492_010 Hb_180980_010 Hb_180980_010 Hb_004625_020--Hb_180980_010 Hb_005183_070 Hb_005183_070 Hb_004625_020--Hb_005183_070 Hb_142056_010 Hb_142056_010 Hb_004625_020--Hb_142056_010 Hb_000137_050 Hb_000137_050 Hb_004625_020--Hb_000137_050 Hb_000449_070 Hb_000449_070 Hb_002171_050--Hb_000449_070 Hb_004917_020 Hb_004917_020 Hb_002171_050--Hb_004917_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_002171_050--Hb_133492_010 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_133492_010--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_133492_010--Hb_000864_050 Hb_133492_010--Hb_004917_020 Hb_029791_010 Hb_029791_010 Hb_133492_010--Hb_029791_010 Hb_180980_010--Hb_029791_010 Hb_000197_260 Hb_000197_260 Hb_180980_010--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_180980_010--Hb_000599_160 Hb_000317_170 Hb_000317_170 Hb_180980_010--Hb_000317_170 Hb_180980_010--Hb_000137_050 Hb_005183_070--Hb_000197_260 Hb_000368_040 Hb_000368_040 Hb_005183_070--Hb_000368_040 Hb_005588_050 Hb_005588_050 Hb_005183_070--Hb_005588_050 Hb_029665_010 Hb_029665_010 Hb_005183_070--Hb_029665_010 Hb_005183_070--Hb_000317_170 Hb_001680_050 Hb_001680_050 Hb_005183_070--Hb_001680_050 Hb_002000_100 Hb_002000_100 Hb_142056_010--Hb_002000_100 Hb_001360_020 Hb_001360_020 Hb_142056_010--Hb_001360_020 Hb_002007_330 Hb_002007_330 Hb_142056_010--Hb_002007_330 Hb_005391_050 Hb_005391_050 Hb_142056_010--Hb_005391_050 Hb_000453_290 Hb_000453_290 Hb_142056_010--Hb_000453_290 Hb_002384_030 Hb_002384_030 Hb_142056_010--Hb_002384_030 Hb_152914_010 Hb_152914_010 Hb_000137_050--Hb_152914_010 Hb_000856_030 Hb_000856_030 Hb_000137_050--Hb_000856_030 Hb_000137_050--Hb_000197_260 Hb_000137_050--Hb_004917_020 Hb_000137_050--Hb_000317_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.306017 0.162346 2.17462 0.0236014 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151275 0.753953

CAGE analysis