Hb_004627_040

Information

Type -
Description -
Location Contig4627: 51303-58329
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22770g
description POPTRDRAFT_659857; hypothetical protein
nr
ID XP_002316359.2
description hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
swissprot
ID Q12893
description Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1
trembl
ID B9HUD8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22770g PE=4 SV=2
Gene Ontology
ID GO:0016021
description transmembrane protein 115-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43825: 55867-56184 , PASA_asmbl_43826: 56857-58323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004627_040 0.0 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
2 Hb_006618_120 0.0665136175 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
3 Hb_013575_010 0.0665363418 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
4 Hb_030736_020 0.0677441973 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000300_630 0.0685686876 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
6 Hb_004990_010 0.069095873 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
7 Hb_008246_060 0.0706506915 - - hypothetical protein F383_01577 [Gossypium arboreum]
8 Hb_000948_230 0.0743738588 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_003057_060 0.0747926169 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002641_060 0.0759109817 - - prefoldin subunit, putative [Ricinus communis]
11 Hb_000260_350 0.0764733441 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001427_160 0.0781955068 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_008616_050 0.078477754 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
14 Hb_000666_100 0.0787223526 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
15 Hb_027380_220 0.0814704806 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
16 Hb_003994_230 0.0816802861 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
17 Hb_027380_060 0.0820884657 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
18 Hb_002053_140 0.083579288 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
19 Hb_008847_030 0.0864129587 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
20 Hb_000594_050 0.0867594566 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004627_040 Hb_004627_040 Hb_006618_120 Hb_006618_120 Hb_004627_040--Hb_006618_120 Hb_013575_010 Hb_013575_010 Hb_004627_040--Hb_013575_010 Hb_030736_020 Hb_030736_020 Hb_004627_040--Hb_030736_020 Hb_000300_630 Hb_000300_630 Hb_004627_040--Hb_000300_630 Hb_004990_010 Hb_004990_010 Hb_004627_040--Hb_004990_010 Hb_008246_060 Hb_008246_060 Hb_004627_040--Hb_008246_060 Hb_006618_120--Hb_000300_630 Hb_002298_030 Hb_002298_030 Hb_006618_120--Hb_002298_030 Hb_006618_120--Hb_008246_060 Hb_006618_120--Hb_013575_010 Hb_000116_270 Hb_000116_270 Hb_006618_120--Hb_000116_270 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_002641_060 Hb_002641_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_002053_140 Hb_002053_140 Hb_030736_020--Hb_002053_140 Hb_000141_080 Hb_000141_080 Hb_030736_020--Hb_000141_080 Hb_001427_160 Hb_001427_160 Hb_030736_020--Hb_001427_160 Hb_012796_020 Hb_012796_020 Hb_030736_020--Hb_012796_020 Hb_001232_190 Hb_001232_190 Hb_030736_020--Hb_001232_190 Hb_005023_010 Hb_005023_010 Hb_000300_630--Hb_005023_010 Hb_001018_110 Hb_001018_110 Hb_000300_630--Hb_001018_110 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_000300_630--Hb_001633_130 Hb_004990_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_004990_010--Hb_093458_040 Hb_002989_020 Hb_002989_020 Hb_004990_010--Hb_002989_020 Hb_000487_270 Hb_000487_270 Hb_004990_010--Hb_000487_270 Hb_013399_020 Hb_013399_020 Hb_004990_010--Hb_013399_020 Hb_000948_230 Hb_000948_230 Hb_004990_010--Hb_000948_230 Hb_008246_060--Hb_003057_060 Hb_024439_010 Hb_024439_010 Hb_008246_060--Hb_024439_010 Hb_008246_060--Hb_013575_010 Hb_001511_060 Hb_001511_060 Hb_008246_060--Hb_001511_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.52282 8.71746 11.9397 25.0281 15.0835 13.9664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3437 17.6097 14.3974 11.9057 12.676

CAGE analysis