Hb_004627_060

Information

Type -
Description -
Location Contig4627: 62680-72680
Sequence    

Annotation

kegg
ID rcu:RCOM_0333030
description ethylene receptor, putative (EC:2.7.13.3)
nr
ID XP_012077870.1
description PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
swissprot
ID Q9ZWL6
description Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1
trembl
ID A0A067KLG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13544 PE=4 SV=1
Gene Ontology
ID GO:0005789
description signal transduction histidine hybrid- ethylene sensor isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43828: 62603-72594 , PASA_asmbl_43829: 71537-71771 , PASA_asmbl_43830: 72091-72190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004627_060 0.0 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
2 Hb_000088_130 0.0646342295 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
3 Hb_002107_070 0.0711534346 - - hypothetical protein RCOM_1598630 [Ricinus communis]
4 Hb_000856_140 0.0722510206 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
5 Hb_104061_020 0.0737018328 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
6 Hb_007635_030 0.0751711383 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
7 Hb_002329_040 0.0763680712 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
8 Hb_009175_020 0.0841048366 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
9 Hb_011173_030 0.0844526699 - - pumilio, putative [Ricinus communis]
10 Hb_148909_030 0.0855716957 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
11 Hb_001369_130 0.0862423365 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
12 Hb_025477_040 0.0866583152 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
13 Hb_123903_010 0.0876004812 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
14 Hb_010053_030 0.0881401358 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
15 Hb_001454_280 0.0882147509 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
16 Hb_000307_210 0.0888782888 - - Transportin 1 isoform 1 [Theobroma cacao]
17 Hb_000740_100 0.0896552481 - - calpain, putative [Ricinus communis]
18 Hb_012395_140 0.0904556212 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
19 Hb_001301_170 0.0906839374 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
20 Hb_027380_140 0.090847847 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004627_060 Hb_004627_060 Hb_000088_130 Hb_000088_130 Hb_004627_060--Hb_000088_130 Hb_002107_070 Hb_002107_070 Hb_004627_060--Hb_002107_070 Hb_000856_140 Hb_000856_140 Hb_004627_060--Hb_000856_140 Hb_104061_020 Hb_104061_020 Hb_004627_060--Hb_104061_020 Hb_007635_030 Hb_007635_030 Hb_004627_060--Hb_007635_030 Hb_002329_040 Hb_002329_040 Hb_004627_060--Hb_002329_040 Hb_000375_130 Hb_000375_130 Hb_000088_130--Hb_000375_130 Hb_174821_010 Hb_174821_010 Hb_000088_130--Hb_174821_010 Hb_000088_130--Hb_002107_070 Hb_001454_280 Hb_001454_280 Hb_000088_130--Hb_001454_280 Hb_002301_080 Hb_002301_080 Hb_000088_130--Hb_002301_080 Hb_002107_070--Hb_104061_020 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_002107_070--Hb_007635_030 Hb_000032_010 Hb_000032_010 Hb_000856_140--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_000856_140--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000856_140--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000856_140--Hb_004429_160 Hb_148909_030 Hb_148909_030 Hb_000856_140--Hb_148909_030 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_000740_100 Hb_000740_100 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020 Hb_007635_030--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_007635_030--Hb_008112_030 Hb_002174_020 Hb_002174_020 Hb_007635_030--Hb_002174_020 Hb_007635_030--Hb_002329_040 Hb_009615_170 Hb_009615_170 Hb_007635_030--Hb_009615_170 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7343 21.8534 12.5031 14.6379 32.6357 19.5549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84509 9.33385 15.3482 25.898 16.155

CAGE analysis