Hb_004629_010

Information

Type -
Description -
Location Contig4629: 12936-15797
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05130g
description POPTRDRAFT_569806; delta-adaptin family protein
nr
ID XP_012093033.1
description PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
swissprot
ID Q9C744
description AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1
trembl
ID A0A067JKZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05913 PE=4 SV=1
Gene Ontology
ID GO:0005794
description ap-3 complex subunit delta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43835: 13043-14205 , PASA_asmbl_43836: 14218-15410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004629_010 0.0 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
2 Hb_009112_010 0.0551462667 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
3 Hb_006787_060 0.0661151944 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
4 Hb_000120_660 0.0663593004 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
5 Hb_002392_030 0.0679880996 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
6 Hb_005104_010 0.0707820118 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
7 Hb_003929_140 0.0728629167 - - DNA binding protein, putative [Ricinus communis]
8 Hb_002022_070 0.0733420479 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
9 Hb_032920_130 0.0742894465 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
10 Hb_001231_030 0.0753152866 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
11 Hb_133047_010 0.0753712617 - - xanthine dehydrogenase, putative [Ricinus communis]
12 Hb_000345_150 0.0765980802 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
13 Hb_000375_130 0.0771376834 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
14 Hb_000786_040 0.0783190294 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
15 Hb_002066_080 0.0783446019 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
16 Hb_000028_510 0.0783448452 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
17 Hb_000162_280 0.079299333 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
18 Hb_000418_140 0.079539524 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
19 Hb_002615_090 0.0801656843 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_000577_030 0.0806028596 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_004629_010 Hb_004629_010 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_005104_010 Hb_005104_010 Hb_004629_010--Hb_005104_010 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_000162_280 Hb_000162_280 Hb_009112_010--Hb_000162_280 Hb_003633_070 Hb_003633_070 Hb_009112_010--Hb_003633_070 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_006615_120 Hb_006615_120 Hb_009112_010--Hb_006615_120 Hb_001231_030 Hb_001231_030 Hb_006787_060--Hb_001231_030 Hb_032920_130 Hb_032920_130 Hb_006787_060--Hb_032920_130 Hb_133047_010 Hb_133047_010 Hb_006787_060--Hb_133047_010 Hb_000935_090 Hb_000935_090 Hb_006787_060--Hb_000935_090 Hb_002022_070 Hb_002022_070 Hb_006787_060--Hb_002022_070 Hb_003729_030 Hb_003729_030 Hb_000120_660--Hb_003729_030 Hb_157966_010 Hb_157966_010 Hb_000120_660--Hb_157966_010 Hb_000120_660--Hb_005104_010 Hb_000780_170 Hb_000780_170 Hb_000120_660--Hb_000780_170 Hb_008253_030 Hb_008253_030 Hb_000120_660--Hb_008253_030 Hb_002392_030--Hb_133047_010 Hb_002066_080 Hb_002066_080 Hb_002392_030--Hb_002066_080 Hb_148909_030 Hb_148909_030 Hb_002392_030--Hb_148909_030 Hb_004659_080 Hb_004659_080 Hb_002392_030--Hb_004659_080 Hb_000375_130 Hb_000375_130 Hb_002392_030--Hb_000375_130 Hb_001021_200 Hb_001021_200 Hb_005104_010--Hb_001021_200 Hb_000786_040 Hb_000786_040 Hb_005104_010--Hb_000786_040 Hb_000345_150 Hb_000345_150 Hb_005104_010--Hb_000345_150 Hb_003106_030 Hb_003106_030 Hb_005104_010--Hb_003106_030 Hb_000661_020 Hb_000661_020 Hb_003929_140--Hb_000661_020 Hb_003929_140--Hb_002022_070 Hb_000028_510 Hb_000028_510 Hb_003929_140--Hb_000028_510 Hb_000753_100 Hb_000753_100 Hb_003929_140--Hb_000753_100 Hb_003929_140--Hb_001231_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6909 14.911 7.59728 7.18132 12.0131 13.3308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67967 2.89559 5.99375 6.5782 6.68468

CAGE analysis