Hb_004631_020

Information

Type -
Description -
Location Contig4631: 22532-26585
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14390g
description POPTRDRAFT_655493; hypothetical protein
nr
ID XP_012081634.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067KBY2
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_18675 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43846: 22661-26287 , PASA_asmbl_43847: 23388-26459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_020 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_004712_230 0.0503699579 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
3 Hb_000841_040 0.0610155253 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
4 Hb_003090_050 0.0617435565 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
5 Hb_001135_170 0.0643458287 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
6 Hb_005736_030 0.065307108 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
7 Hb_032631_060 0.0666917321 - - Myosin heavy chain, putative [Ricinus communis]
8 Hb_000282_100 0.0676305478 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
9 Hb_003653_030 0.0697575269 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000923_030 0.0737526043 - - F-box family protein [Populus trichocarpa]
11 Hb_000111_460 0.0737574843 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
12 Hb_011381_120 0.0744813336 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
13 Hb_000029_390 0.0747039538 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_000009_470 0.075942123 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_009093_020 0.0781886363 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
16 Hb_011344_030 0.0789987276 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
17 Hb_003053_080 0.0794658624 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001832_180 0.0798343928 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
19 Hb_000010_380 0.0800539797 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
20 Hb_001287_070 0.0801460025 - - latex plastidic aldolase-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_004631_020 Hb_004631_020 Hb_004712_230 Hb_004712_230 Hb_004631_020--Hb_004712_230 Hb_000841_040 Hb_000841_040 Hb_004631_020--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_004631_020--Hb_003090_050 Hb_001135_170 Hb_001135_170 Hb_004631_020--Hb_001135_170 Hb_005736_030 Hb_005736_030 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060 Hb_004712_230--Hb_005736_030 Hb_011381_120 Hb_011381_120 Hb_004712_230--Hb_011381_120 Hb_002995_060 Hb_002995_060 Hb_004712_230--Hb_002995_060 Hb_002818_130 Hb_002818_130 Hb_004712_230--Hb_002818_130 Hb_003653_030 Hb_003653_030 Hb_004712_230--Hb_003653_030 Hb_000841_040--Hb_003090_050 Hb_009093_020 Hb_009093_020 Hb_000841_040--Hb_009093_020 Hb_000111_460 Hb_000111_460 Hb_000841_040--Hb_000111_460 Hb_000841_040--Hb_011381_120 Hb_001832_180 Hb_001832_180 Hb_000841_040--Hb_001832_180 Hb_003090_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_003090_050--Hb_000923_030 Hb_001287_070 Hb_001287_070 Hb_003090_050--Hb_001287_070 Hb_008748_050 Hb_008748_050 Hb_003090_050--Hb_008748_050 Hb_000010_380 Hb_000010_380 Hb_003090_050--Hb_000010_380 Hb_000992_090 Hb_000992_090 Hb_001135_170--Hb_000992_090 Hb_011344_030 Hb_011344_030 Hb_001135_170--Hb_011344_030 Hb_001135_170--Hb_001832_180 Hb_023344_040 Hb_023344_040 Hb_001135_170--Hb_023344_040 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_000029_150 Hb_000029_150 Hb_005736_030--Hb_000029_150 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_000629_110 Hb_000629_110 Hb_005736_030--Hb_000629_110 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040 Hb_001104_080 Hb_001104_080 Hb_032631_060--Hb_001104_080 Hb_032631_060--Hb_000010_380 Hb_004116_030 Hb_004116_030 Hb_032631_060--Hb_004116_030 Hb_000805_080 Hb_000805_080 Hb_032631_060--Hb_000805_080 Hb_032631_060--Hb_000923_030 Hb_032631_060--Hb_003653_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.518365 8.68528 3.1975 0.0104338 0.0302172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14211 0.0745429 0 0.178014 34.9665

CAGE analysis