Hb_004631_030

Information

Type -
Description -
Location Contig4631: 29623-30765
Sequence    

Annotation

kegg
ID cit:102628181
description putative clathrin assembly protein At4g40080-like
nr
ID XP_012081633.1
description PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
swissprot
ID Q8L936
description Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2
trembl
ID A0A067KD53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18674 PE=4 SV=1
Gene Ontology
ID GO:0005543
description clathrin assembly protein at4g40080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_030 0.0 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
2 Hb_000297_220 0.0661749559 - - SAUR family protein [Theobroma cacao]
3 Hb_012516_030 0.0773105314 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
4 Hb_000566_170 0.0796026952 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
5 Hb_000956_060 0.0796671914 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
6 Hb_000510_210 0.0813774407 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
7 Hb_002054_090 0.0906408344 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
8 Hb_000975_130 0.1201482511 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
9 Hb_106728_020 0.1255685724 - - cytochrome P450, putative [Ricinus communis]
10 Hb_041063_010 0.1334329558 - - Disease resistance protein RFL1, putative [Ricinus communis]
11 Hb_131417_010 0.1375924177 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
12 Hb_001369_530 0.1472273083 - - 21 kDa protein precursor, putative [Ricinus communis]
13 Hb_003811_050 0.1481297213 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
14 Hb_011206_050 0.1482505723 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
15 Hb_000059_110 0.1546371404 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
16 Hb_000429_030 0.1576412832 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_000521_350 0.1589107275 - - unnamed protein product [Vitis vinifera]
18 Hb_179118_010 0.1595643395 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
19 Hb_000676_130 0.1628037174 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
20 Hb_001821_030 0.1648600865 - - hypothetical protein JCGZ_13357 [Jatropha curcas]

Gene co-expression network

sample Hb_004631_030 Hb_004631_030 Hb_000297_220 Hb_000297_220 Hb_004631_030--Hb_000297_220 Hb_012516_030 Hb_012516_030 Hb_004631_030--Hb_012516_030 Hb_000566_170 Hb_000566_170 Hb_004631_030--Hb_000566_170 Hb_000956_060 Hb_000956_060 Hb_004631_030--Hb_000956_060 Hb_000510_210 Hb_000510_210 Hb_004631_030--Hb_000510_210 Hb_002054_090 Hb_002054_090 Hb_004631_030--Hb_002054_090 Hb_000297_220--Hb_012516_030 Hb_000297_220--Hb_000956_060 Hb_041063_010 Hb_041063_010 Hb_000297_220--Hb_041063_010 Hb_000297_220--Hb_002054_090 Hb_000306_050 Hb_000306_050 Hb_000297_220--Hb_000306_050 Hb_012516_030--Hb_000956_060 Hb_012516_030--Hb_000566_170 Hb_012516_030--Hb_000510_210 Hb_000975_130 Hb_000975_130 Hb_012516_030--Hb_000975_130 Hb_000566_170--Hb_000510_210 Hb_106728_020 Hb_106728_020 Hb_000566_170--Hb_106728_020 Hb_179118_010 Hb_179118_010 Hb_000566_170--Hb_179118_010 Hb_011206_050 Hb_011206_050 Hb_000566_170--Hb_011206_050 Hb_000956_060--Hb_000975_130 Hb_003811_050 Hb_003811_050 Hb_000956_060--Hb_003811_050 Hb_000676_130 Hb_000676_130 Hb_000956_060--Hb_000676_130 Hb_000510_210--Hb_106728_020 Hb_000510_210--Hb_179118_010 Hb_000510_210--Hb_011206_050 Hb_002054_090--Hb_041063_010 Hb_060236_010 Hb_060236_010 Hb_002054_090--Hb_060236_010 Hb_004241_050 Hb_004241_050 Hb_002054_090--Hb_004241_050 Hb_000059_110 Hb_000059_110 Hb_002054_090--Hb_000059_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.148997 0.0651446 0.571074 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.267723 0

CAGE analysis