Hb_004631_080

Information

Type -
Description -
Location Contig4631: 53798-64004
Sequence    

Annotation

kegg
ID pop:POPTR_0005s19170g
description POPTRDRAFT_818433; hypothetical protein
nr
ID AHH24342.1
description P3B-ATPase PH1 [Petunia x hybrida]
swissprot
ID P0ABB8
description Magnesium-transporting ATPase, P-type 1 OS=Escherichia coli (strain K12) GN=mgtA PE=1 SV=1
trembl
ID A0A023J869
description P3B-ATPase PH1 OS=Petunia hybrida GN=PH1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43851: 55371-61467 , PASA_asmbl_43852: 61556-61980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_080 0.0 - - P3B-ATPase PH1 [Petunia x hybrida]
2 Hb_002030_170 0.0900590896 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
3 Hb_002272_230 0.0973063221 - - sodium/hydrogen exchanger, putative [Ricinus communis]
4 Hb_000347_110 0.1419101117 - - BnaA05g25330D [Brassica napus]
5 Hb_001842_060 0.1503528516 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
6 Hb_025526_080 0.1559402289 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
7 Hb_000173_260 0.1563424705 - - hypothetical protein L484_010046 [Morus notabilis]
8 Hb_004041_100 0.1594937762 - - -
9 Hb_003626_040 0.1627873224 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
10 Hb_011200_020 0.1706316769 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_009898_030 0.1760859358 - - PREDICTED: uncharacterized protein LOC103720281 [Phoenix dactylifera]
12 Hb_001488_280 0.1782419195 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
13 Hb_002200_060 0.1787373289 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
14 Hb_031042_030 0.1810216537 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
15 Hb_000527_070 0.1859733753 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
16 Hb_000345_340 0.1867027479 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
17 Hb_001024_030 0.1885581542 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
18 Hb_006717_070 0.1901673422 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
19 Hb_004657_040 0.1904080002 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
20 Hb_002660_040 0.1904107047 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004631_080 Hb_004631_080 Hb_002030_170 Hb_002030_170 Hb_004631_080--Hb_002030_170 Hb_002272_230 Hb_002272_230 Hb_004631_080--Hb_002272_230 Hb_000347_110 Hb_000347_110 Hb_004631_080--Hb_000347_110 Hb_001842_060 Hb_001842_060 Hb_004631_080--Hb_001842_060 Hb_025526_080 Hb_025526_080 Hb_004631_080--Hb_025526_080 Hb_000173_260 Hb_000173_260 Hb_004631_080--Hb_000173_260 Hb_002030_170--Hb_001842_060 Hb_002660_040 Hb_002660_040 Hb_002030_170--Hb_002660_040 Hb_002030_170--Hb_002272_230 Hb_000313_370 Hb_000313_370 Hb_002030_170--Hb_000313_370 Hb_002662_090 Hb_002662_090 Hb_002030_170--Hb_002662_090 Hb_004041_100 Hb_004041_100 Hb_002272_230--Hb_004041_100 Hb_002272_230--Hb_025526_080 Hb_002272_230--Hb_000347_110 Hb_002200_060 Hb_002200_060 Hb_002272_230--Hb_002200_060 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000347_110--Hb_000173_260 Hb_000347_110--Hb_004041_100 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000181_020 Hb_000181_020 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_002471_140 Hb_002471_140 Hb_001842_060--Hb_002471_140 Hb_001842_060--Hb_002662_090 Hb_000953_040 Hb_000953_040 Hb_001842_060--Hb_000953_040 Hb_000345_340 Hb_000345_340 Hb_001842_060--Hb_000345_340 Hb_031042_030 Hb_031042_030 Hb_025526_080--Hb_031042_030 Hb_000473_070 Hb_000473_070 Hb_025526_080--Hb_000473_070 Hb_004800_220 Hb_004800_220 Hb_025526_080--Hb_004800_220 Hb_004656_010 Hb_004656_010 Hb_025526_080--Hb_004656_010 Hb_000173_260--Hb_011360_060 Hb_000173_260--Hb_004041_100 Hb_000625_030 Hb_000625_030 Hb_000173_260--Hb_000625_030 Hb_000173_260--Hb_002272_230 Hb_000173_260--Hb_000181_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.364493 2.91307 2.33367 0.909314 0.217099 0.588991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.253696 0.399282 0.212261 6.54917 1.34952

CAGE analysis