Hb_004631_110

Information

Type -
Description -
Location Contig4631: 83607-84917
Sequence    

Annotation

kegg
ID rcu:RCOM_0337900
description ring finger protein, putative
nr
ID XP_002534099.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q8LFY8
description RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2
trembl
ID B9T780
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0337900 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl54-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43860: 83101-84905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_110 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_000840_070 0.0850170188 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_001195_350 0.1056679507 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
4 Hb_000465_260 0.1098839562 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
5 Hb_001818_060 0.1176719266 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
6 Hb_158696_010 0.1186218868 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
7 Hb_000059_130 0.1214912089 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
8 Hb_003752_120 0.1227605932 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
9 Hb_033363_010 0.1298826145 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
10 Hb_000216_020 0.1312677944 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
11 Hb_000056_280 0.1384811498 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
12 Hb_000200_170 0.1389326357 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
13 Hb_000371_060 0.1409477676 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
14 Hb_000950_040 0.1411225259 - - cation-transporting atpase plant, putative [Ricinus communis]
15 Hb_000025_400 0.1420103129 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
16 Hb_001856_170 0.1420896653 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
17 Hb_002849_070 0.1428719003 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
18 Hb_000069_780 0.144036493 - - atpob1, putative [Ricinus communis]
19 Hb_002447_150 0.1444540768 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_002685_030 0.1452413728 - - PREDICTED: protein SMG7L [Jatropha curcas]

Gene co-expression network

sample Hb_004631_110 Hb_004631_110 Hb_000840_070 Hb_000840_070 Hb_004631_110--Hb_000840_070 Hb_001195_350 Hb_001195_350 Hb_004631_110--Hb_001195_350 Hb_000465_260 Hb_000465_260 Hb_004631_110--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_004631_110--Hb_001818_060 Hb_158696_010 Hb_158696_010 Hb_004631_110--Hb_158696_010 Hb_000059_130 Hb_000059_130 Hb_004631_110--Hb_000059_130 Hb_000840_070--Hb_001195_350 Hb_002471_140 Hb_002471_140 Hb_000840_070--Hb_002471_140 Hb_001856_170 Hb_001856_170 Hb_000840_070--Hb_001856_170 Hb_000840_070--Hb_000465_260 Hb_000009_140 Hb_000009_140 Hb_000840_070--Hb_000009_140 Hb_000371_060 Hb_000371_060 Hb_001195_350--Hb_000371_060 Hb_010068_070 Hb_010068_070 Hb_001195_350--Hb_010068_070 Hb_033363_010 Hb_033363_010 Hb_001195_350--Hb_033363_010 Hb_002524_020 Hb_002524_020 Hb_001195_350--Hb_002524_020 Hb_009646_010 Hb_009646_010 Hb_000465_260--Hb_009646_010 Hb_000056_280 Hb_000056_280 Hb_000465_260--Hb_000056_280 Hb_000465_260--Hb_001818_060 Hb_000025_400 Hb_000025_400 Hb_000465_260--Hb_000025_400 Hb_000465_260--Hb_033363_010 Hb_000200_170 Hb_000200_170 Hb_001818_060--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_001818_060--Hb_002849_070 Hb_001818_060--Hb_001195_350 Hb_000676_040 Hb_000676_040 Hb_001818_060--Hb_000676_040 Hb_004106_010 Hb_004106_010 Hb_158696_010--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_158696_010--Hb_012787_040 Hb_001662_170 Hb_001662_170 Hb_158696_010--Hb_001662_170 Hb_003752_120 Hb_003752_120 Hb_158696_010--Hb_003752_120 Hb_093177_010 Hb_093177_010 Hb_158696_010--Hb_093177_010 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_008667_060 Hb_008667_060 Hb_000059_130--Hb_008667_060 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000059_130--Hb_000371_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3769 131.273 43.2665 81.2837 7.68995 14.8185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9948 5.94815 8.96522 54.4774 21.2698

CAGE analysis