Hb_004631_130

Information

Type -
Description -
Location Contig4631: 88087-95380
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07240g
description POPTRDRAFT_558490; helicase domain-containing family protein
nr
ID XP_002307067.1
description helicase domain-containing family protein [Populus trichocarpa]
swissprot
ID P0CE10
description Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=3 SV=1
trembl
ID B9H4Q2
description Helicase domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s07240g PE=4 SV=1
Gene Ontology
ID GO:0003676
description helicase domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43862: 94529-94675 , PASA_asmbl_43863: 94723-95167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_130 0.0 - - helicase domain-containing family protein [Populus trichocarpa]
2 Hb_033642_070 0.1774276094 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
3 Hb_001377_250 0.1916079361 - - dynamin, putative [Ricinus communis]
4 Hb_000189_470 0.19422682 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
5 Hb_010921_020 0.1944999975 - - PREDICTED: cyclin-SDS [Jatropha curcas]
6 Hb_002475_130 0.195470089 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
7 Hb_089100_040 0.1974337858 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
8 Hb_002233_020 0.2024839523 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_000866_370 0.2039581562 - - synaptotagmin, putative [Ricinus communis]
10 Hb_000010_350 0.2051999742 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
11 Hb_072276_010 0.2065822319 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
12 Hb_004800_190 0.2079435156 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
13 Hb_003126_020 0.2092056402 - - Oligopeptide transporter, putative [Ricinus communis]
14 Hb_002686_400 0.2105341814 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
15 Hb_001863_450 0.215842773 - - cryptochrome 1.2 [Populus tremula]
16 Hb_012753_040 0.2192814032 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
17 Hb_000631_140 0.219907581 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
18 Hb_042175_010 0.2213654013 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
19 Hb_001230_020 0.221642993 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
20 Hb_002375_050 0.2257784505 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]

Gene co-expression network

sample Hb_004631_130 Hb_004631_130 Hb_033642_070 Hb_033642_070 Hb_004631_130--Hb_033642_070 Hb_001377_250 Hb_001377_250 Hb_004631_130--Hb_001377_250 Hb_000189_470 Hb_000189_470 Hb_004631_130--Hb_000189_470 Hb_010921_020 Hb_010921_020 Hb_004631_130--Hb_010921_020 Hb_002475_130 Hb_002475_130 Hb_004631_130--Hb_002475_130 Hb_089100_040 Hb_089100_040 Hb_004631_130--Hb_089100_040 Hb_003126_020 Hb_003126_020 Hb_033642_070--Hb_003126_020 Hb_158696_010 Hb_158696_010 Hb_033642_070--Hb_158696_010 Hb_001863_450 Hb_001863_450 Hb_033642_070--Hb_001863_450 Hb_001662_170 Hb_001662_170 Hb_033642_070--Hb_001662_170 Hb_056012_010 Hb_056012_010 Hb_033642_070--Hb_056012_010 Hb_004466_070 Hb_004466_070 Hb_033642_070--Hb_004466_070 Hb_002233_020 Hb_002233_020 Hb_001377_250--Hb_002233_020 Hb_042175_010 Hb_042175_010 Hb_001377_250--Hb_042175_010 Hb_027337_090 Hb_027337_090 Hb_001377_250--Hb_027337_090 Hb_000866_370 Hb_000866_370 Hb_001377_250--Hb_000866_370 Hb_003398_070 Hb_003398_070 Hb_001377_250--Hb_003398_070 Hb_000189_470--Hb_089100_040 Hb_122273_020 Hb_122273_020 Hb_000189_470--Hb_122273_020 Hb_002918_320 Hb_002918_320 Hb_000189_470--Hb_002918_320 Hb_002005_120 Hb_002005_120 Hb_000189_470--Hb_002005_120 Hb_001699_150 Hb_001699_150 Hb_000189_470--Hb_001699_150 Hb_000413_250 Hb_000413_250 Hb_000189_470--Hb_000413_250 Hb_000922_220 Hb_000922_220 Hb_010921_020--Hb_000922_220 Hb_000175_270 Hb_000175_270 Hb_010921_020--Hb_000175_270 Hb_001073_030 Hb_001073_030 Hb_010921_020--Hb_001073_030 Hb_000032_020 Hb_000032_020 Hb_010921_020--Hb_000032_020 Hb_005183_140 Hb_005183_140 Hb_010921_020--Hb_005183_140 Hb_000320_360 Hb_000320_360 Hb_010921_020--Hb_000320_360 Hb_001921_010 Hb_001921_010 Hb_002475_130--Hb_001921_010 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_007259_020 Hb_007259_020 Hb_002475_130--Hb_007259_020 Hb_002232_050 Hb_002232_050 Hb_002475_130--Hb_002232_050 Hb_000532_130 Hb_000532_130 Hb_002475_130--Hb_000532_130 Hb_000233_100 Hb_000233_100 Hb_002475_130--Hb_000233_100 Hb_089100_040--Hb_000866_370 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.869167 7.06468 0.451662 0.655883 1.47659 0.315345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.487495 0.319716 0.0369517 1.88234 2.21329

CAGE analysis