Hb_004631_180

Information

Type -
Description -
Location Contig4631: 145230-153205
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07320g
description hypothetical protein
nr
ID XP_012081622.1
description PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
swissprot
ID Q54Q92
description LMBR1 domain-containing protein 2 homolog A OS=Dictyostelium discoideum GN=DDB_G0284019 PE=3 SV=1
trembl
ID A0A067K0V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18662 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lmbr1 domain-containing protein 2 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43870: 145343-147550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_180 0.0 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
2 Hb_006916_040 0.0388647305 - - 60S ribosomal protein L7a, putative [Ricinus communis]
3 Hb_000576_020 0.0517988293 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
4 Hb_001051_080 0.0553029712 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
5 Hb_000120_430 0.0562677955 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
6 Hb_000256_190 0.0688032917 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
7 Hb_002235_210 0.0704989312 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
8 Hb_000076_160 0.0721844666 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
9 Hb_000309_040 0.0726470083 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
10 Hb_002311_070 0.0740329718 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
11 Hb_033834_030 0.0750357185 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
12 Hb_003124_220 0.0785094496 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
13 Hb_001143_180 0.0798563155 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
14 Hb_000959_270 0.0805543188 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
15 Hb_008511_030 0.0816724935 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
16 Hb_003549_150 0.0833286159 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
17 Hb_000928_220 0.0834717004 - - PREDICTED: protein SCAI [Jatropha curcas]
18 Hb_001077_030 0.0842328671 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
19 Hb_001347_040 0.0853189092 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
20 Hb_007416_300 0.085335702 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]

Gene co-expression network

sample Hb_004631_180 Hb_004631_180 Hb_006916_040 Hb_006916_040 Hb_004631_180--Hb_006916_040 Hb_000576_020 Hb_000576_020 Hb_004631_180--Hb_000576_020 Hb_001051_080 Hb_001051_080 Hb_004631_180--Hb_001051_080 Hb_000120_430 Hb_000120_430 Hb_004631_180--Hb_000120_430 Hb_000256_190 Hb_000256_190 Hb_004631_180--Hb_000256_190 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210 Hb_006916_040--Hb_000576_020 Hb_006916_040--Hb_000256_190 Hb_006916_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030 Hb_000576_020--Hb_000076_160 Hb_002311_070 Hb_002311_070 Hb_000576_020--Hb_002311_070 Hb_000928_220 Hb_000928_220 Hb_000576_020--Hb_000928_220 Hb_001077_030 Hb_001077_030 Hb_000576_020--Hb_001077_030 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_001051_080--Hb_000120_430 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_000020_150 Hb_000020_150 Hb_000120_430--Hb_000020_150 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_000120_430--Hb_033834_030 Hb_116349_070 Hb_116349_070 Hb_000120_430--Hb_116349_070 Hb_001347_040 Hb_001347_040 Hb_000256_190--Hb_001347_040 Hb_112798_020 Hb_112798_020 Hb_000256_190--Hb_112798_020 Hb_003124_220 Hb_003124_220 Hb_000256_190--Hb_003124_220 Hb_000256_190--Hb_003549_150 Hb_002235_210--Hb_001051_080 Hb_003893_030 Hb_003893_030 Hb_002235_210--Hb_003893_030 Hb_012322_020 Hb_012322_020 Hb_002235_210--Hb_012322_020 Hb_002235_210--Hb_006916_040 Hb_004310_020 Hb_004310_020 Hb_002235_210--Hb_004310_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8412 16.6288 14.505 17.0747 20.2808 17.6543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9037 12.8051 8.27134 10.7524 4.83277

CAGE analysis