Hb_004631_210

Information

Type -
Description -
Location Contig4631: 191803-197132
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05070g
description POPTRDRAFT_718708; hypothetical protein
nr
ID XP_002309963.2
description hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
swissprot
ID Q9FJN7
description LanC-like protein GCL1 OS=Arabidopsis thaliana GN=GCL1 PE=2 SV=1
trembl
ID B9HFD7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05070g PE=4 SV=2
Gene Ontology
ID GO:0019898
description lanc-like protein gcl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43876: 191767-197128 , PASA_asmbl_43877: 191970-197128 , PASA_asmbl_43878: 194727-194868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_210 0.0 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
2 Hb_001341_100 0.1027984565 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
3 Hb_003327_070 0.1208186994 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
4 Hb_006538_080 0.120876513 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
5 Hb_000997_180 0.125759823 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000699_230 0.1291157451 - - Ankyrin repeat family protein, putative [Theobroma cacao]
7 Hb_000071_070 0.1349560574 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
8 Hb_000465_300 0.1386290432 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
9 Hb_001049_020 0.1393385912 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004724_210 0.1409405048 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002042_130 0.1438536815 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
12 Hb_001268_120 0.1445401963 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000749_050 0.1461466521 - - mitochondrial thioredoxin [Hevea brasiliensis]
14 Hb_001825_060 0.1463318677 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
15 Hb_003044_030 0.1468536271 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
16 Hb_000225_060 0.1506393202 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
17 Hb_001486_030 0.1507232104 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007382_120 0.1508916516 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
19 Hb_003038_140 0.1509327571 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
20 Hb_050847_050 0.1517260652 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004631_210 Hb_004631_210 Hb_001341_100 Hb_001341_100 Hb_004631_210--Hb_001341_100 Hb_003327_070 Hb_003327_070 Hb_004631_210--Hb_003327_070 Hb_006538_080 Hb_006538_080 Hb_004631_210--Hb_006538_080 Hb_000997_180 Hb_000997_180 Hb_004631_210--Hb_000997_180 Hb_000699_230 Hb_000699_230 Hb_004631_210--Hb_000699_230 Hb_000071_070 Hb_000071_070 Hb_004631_210--Hb_000071_070 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001486_030 Hb_001486_030 Hb_001341_100--Hb_001486_030 Hb_003442_070 Hb_003442_070 Hb_001341_100--Hb_003442_070 Hb_004064_010 Hb_004064_010 Hb_001341_100--Hb_004064_010 Hb_000465_300 Hb_000465_300 Hb_001341_100--Hb_000465_300 Hb_003327_070--Hb_000997_180 Hb_003327_070--Hb_000699_230 Hb_000152_320 Hb_000152_320 Hb_003327_070--Hb_000152_320 Hb_009193_100 Hb_009193_100 Hb_003327_070--Hb_009193_100 Hb_000152_330 Hb_000152_330 Hb_003327_070--Hb_000152_330 Hb_014068_050 Hb_014068_050 Hb_006538_080--Hb_014068_050 Hb_000225_060 Hb_000225_060 Hb_006538_080--Hb_000225_060 Hb_002301_170 Hb_002301_170 Hb_006538_080--Hb_002301_170 Hb_050847_050 Hb_050847_050 Hb_006538_080--Hb_050847_050 Hb_000111_180 Hb_000111_180 Hb_006538_080--Hb_000111_180 Hb_000997_180--Hb_000699_230 Hb_002915_060 Hb_002915_060 Hb_000997_180--Hb_002915_060 Hb_000625_090 Hb_000625_090 Hb_000997_180--Hb_000625_090 Hb_000490_060 Hb_000490_060 Hb_000997_180--Hb_000490_060 Hb_006501_160 Hb_006501_160 Hb_000997_180--Hb_006501_160 Hb_000110_300 Hb_000110_300 Hb_000699_230--Hb_000110_300 Hb_001268_120 Hb_001268_120 Hb_000699_230--Hb_001268_120 Hb_000699_230--Hb_000625_090 Hb_000699_230--Hb_009193_100 Hb_000699_230--Hb_002915_060 Hb_009620_020 Hb_009620_020 Hb_000071_070--Hb_009620_020 Hb_003044_030 Hb_003044_030 Hb_000071_070--Hb_003044_030 Hb_000071_070--Hb_000225_060 Hb_000363_210 Hb_000363_210 Hb_000071_070--Hb_000363_210 Hb_008173_110 Hb_008173_110 Hb_000071_070--Hb_008173_110 Hb_000071_070--Hb_050847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7939 113.885 47.0249 63.0445 20.4562 18.1273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.8982 77.422 63.7166 102.161 22.168

CAGE analysis