Hb_004634_030

Information

Type -
Description -
Location Contig4634: 107024-108021
Sequence    

Annotation

kegg
ID rcu:RCOM_0485560
description hypothetical protein
nr
ID XP_002524169.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDV0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0485560 PE=4 SV=1
Gene Ontology
ID GO:0006811
description actin-related protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43879: 106911-108101
cDNA
(Sanger)
(ID:Location)		 007_A12.ab1: 106992-108101

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004634_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002205_150 0.0775856571 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
3 Hb_142026_010 0.0877732284 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
4 Hb_012539_100 0.0906657174 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
5 Hb_008725_020 0.0926457265 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
6 Hb_000098_260 0.0959416114 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_002902_040 0.0966575907 - - PREDICTED: peroxidase 51 [Jatropha curcas]
8 Hb_006736_040 0.0970467872 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
9 Hb_092975_010 0.0972241662 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
10 Hb_001013_080 0.0974037772 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_003849_200 0.0981353474 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
12 Hb_012787_060 0.1012746074 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
13 Hb_002888_100 0.1013432117 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
14 Hb_002151_020 0.1019623405 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
15 Hb_001562_030 0.1036292581 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
16 Hb_000742_130 0.1044303458 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
17 Hb_003435_040 0.1058567286 - - tonoplast intrinsic protein [Hevea brasiliensis]
18 Hb_153180_010 0.1134616989 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
19 Hb_000991_080 0.1139326103 - - kinase, putative [Ricinus communis]
20 Hb_000163_180 0.1155891889 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004634_030 Hb_004634_030 Hb_002205_150 Hb_002205_150 Hb_004634_030--Hb_002205_150 Hb_142026_010 Hb_142026_010 Hb_004634_030--Hb_142026_010 Hb_012539_100 Hb_012539_100 Hb_004634_030--Hb_012539_100 Hb_008725_020 Hb_008725_020 Hb_004634_030--Hb_008725_020 Hb_000098_260 Hb_000098_260 Hb_004634_030--Hb_000098_260 Hb_002902_040 Hb_002902_040 Hb_004634_030--Hb_002902_040 Hb_002205_150--Hb_142026_010 Hb_002205_150--Hb_012539_100 Hb_004228_070 Hb_004228_070 Hb_002205_150--Hb_004228_070 Hb_003454_050 Hb_003454_050 Hb_002205_150--Hb_003454_050 Hb_002205_150--Hb_002902_040 Hb_142026_010--Hb_002902_040 Hb_019496_040 Hb_019496_040 Hb_142026_010--Hb_019496_040 Hb_106089_010 Hb_106089_010 Hb_142026_010--Hb_106089_010 Hb_142026_010--Hb_003454_050 Hb_000163_180 Hb_000163_180 Hb_142026_010--Hb_000163_180 Hb_012539_100--Hb_142026_010 Hb_012539_100--Hb_106089_010 Hb_012539_100--Hb_002902_040 Hb_007221_040 Hb_007221_040 Hb_012539_100--Hb_007221_040 Hb_002325_050 Hb_002325_050 Hb_008725_020--Hb_002325_050 Hb_003849_200 Hb_003849_200 Hb_008725_020--Hb_003849_200 Hb_001562_030 Hb_001562_030 Hb_008725_020--Hb_001562_030 Hb_001013_080 Hb_001013_080 Hb_008725_020--Hb_001013_080 Hb_001198_180 Hb_001198_180 Hb_008725_020--Hb_001198_180 Hb_000991_080 Hb_000991_080 Hb_008725_020--Hb_000991_080 Hb_092975_010 Hb_092975_010 Hb_000098_260--Hb_092975_010 Hb_002641_140 Hb_002641_140 Hb_000098_260--Hb_002641_140 Hb_000365_430 Hb_000365_430 Hb_000098_260--Hb_000365_430 Hb_000411_020 Hb_000411_020 Hb_000098_260--Hb_000411_020 Hb_000742_130 Hb_000742_130 Hb_000098_260--Hb_000742_130 Hb_000645_160 Hb_000645_160 Hb_000098_260--Hb_000645_160 Hb_002151_020 Hb_002151_020 Hb_002902_040--Hb_002151_020 Hb_002902_040--Hb_019496_040 Hb_000342_020 Hb_000342_020 Hb_002902_040--Hb_000342_020 Hb_144703_010 Hb_144703_010 Hb_002902_040--Hb_144703_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.8873 3.94363 6.75956 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.45926 2.29633

CAGE analysis