Hb_004635_030

Information

Type -
Description -
Location Contig4635: 33001-35380
Sequence    

Annotation

kegg
ID rcu:RCOM_0292790
description transcription regulation, putative
nr
ID XP_012072972.1
description PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
swissprot
ID Q9FVS1
description F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1
trembl
ID A0A067KYH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06759 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43881: 32946-33222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_030 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
2 Hb_002478_040 0.0976125698 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
3 Hb_005194_020 0.1020751208 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
4 Hb_006538_130 0.1042467463 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
5 Hb_008695_090 0.1118812677 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
6 Hb_000291_030 0.1152178044 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
7 Hb_001477_070 0.1163713026 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000979_060 0.1176174947 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
9 Hb_000579_190 0.1239051724 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
10 Hb_001377_360 0.1240520153 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
11 Hb_000009_220 0.1301473299 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
12 Hb_002685_200 0.1328936344 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
13 Hb_002311_480 0.1350168012 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
14 Hb_000375_290 0.1362665726 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_174829_020 0.1365751957 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
16 Hb_004724_220 0.1370002969 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
17 Hb_001638_030 0.1376946363 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
18 Hb_185516_010 0.1427121346 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
19 Hb_011915_040 0.1436035398 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
20 Hb_004943_030 0.1439586095 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004635_030 Hb_004635_030 Hb_002478_040 Hb_002478_040 Hb_004635_030--Hb_002478_040 Hb_005194_020 Hb_005194_020 Hb_004635_030--Hb_005194_020 Hb_006538_130 Hb_006538_130 Hb_004635_030--Hb_006538_130 Hb_008695_090 Hb_008695_090 Hb_004635_030--Hb_008695_090 Hb_000291_030 Hb_000291_030 Hb_004635_030--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_004635_030--Hb_001477_070 Hb_000979_060 Hb_000979_060 Hb_002478_040--Hb_000979_060 Hb_000152_760 Hb_000152_760 Hb_002478_040--Hb_000152_760 Hb_000579_190 Hb_000579_190 Hb_002478_040--Hb_000579_190 Hb_013405_150 Hb_013405_150 Hb_002478_040--Hb_013405_150 Hb_003605_050 Hb_003605_050 Hb_002478_040--Hb_003605_050 Hb_005194_020--Hb_000979_060 Hb_000951_100 Hb_000951_100 Hb_005194_020--Hb_000951_100 Hb_002311_480 Hb_002311_480 Hb_005194_020--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_005194_020--Hb_011671_310 Hb_001005_020 Hb_001005_020 Hb_005194_020--Hb_001005_020 Hb_000375_290 Hb_000375_290 Hb_006538_130--Hb_000375_290 Hb_006538_130--Hb_008695_090 Hb_000048_080 Hb_000048_080 Hb_006538_130--Hb_000048_080 Hb_000227_270 Hb_000227_270 Hb_006538_130--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_006538_130--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_008695_090--Hb_004943_030 Hb_008695_090--Hb_000375_290 Hb_003682_030 Hb_003682_030 Hb_008695_090--Hb_003682_030 Hb_000723_110 Hb_000723_110 Hb_008695_090--Hb_000723_110 Hb_001754_030 Hb_001754_030 Hb_008695_090--Hb_001754_030 Hb_000169_080 Hb_000169_080 Hb_008695_090--Hb_000169_080 Hb_000011_050 Hb_000011_050 Hb_000291_030--Hb_000011_050 Hb_002631_320 Hb_002631_320 Hb_000291_030--Hb_002631_320 Hb_000291_030--Hb_000579_190 Hb_000291_030--Hb_000979_060 Hb_004236_030 Hb_004236_030 Hb_000291_030--Hb_004236_030 Hb_000084_030 Hb_000084_030 Hb_001477_070--Hb_000084_030 Hb_001477_070--Hb_008695_090 Hb_000407_040 Hb_000407_040 Hb_001477_070--Hb_000407_040 Hb_008103_110 Hb_008103_110 Hb_001477_070--Hb_008103_110 Hb_002681_060 Hb_002681_060 Hb_001477_070--Hb_002681_060 Hb_014361_150 Hb_014361_150 Hb_001477_070--Hb_014361_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4806 33.0898 37.5921 11.7609 9.40156 9.57005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.005 9.73356 14.8245 4.47297 4.75678

CAGE analysis