Hb_004635_070

Information

Type -
Description -
Location Contig4635: 48644-51160
Sequence    

Annotation

kegg
ID sly:101251215
description signal recognition particle 54 kDa protein, chloroplastic
nr
ID XP_004246503.1
description PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
swissprot
ID P37107
description Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
trembl
ID M1AHD9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008871 PE=4 SV=1
Gene Ontology
ID GO:0005786
description signal recognition particle 54 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_070 0.0 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
2 Hb_150651_020 0.1232876816 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_001001_120 0.1245517821 - - protein phosphatase, putative [Ricinus communis]
4 Hb_001953_100 0.1268186266 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
5 Hb_007894_190 0.1373840751 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
6 Hb_000009_020 0.1413355873 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
7 Hb_050847_040 0.1427202123 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
8 Hb_003894_060 0.1494005779 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005214_070 0.1542999516 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
10 Hb_001365_030 0.1556330794 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
11 Hb_000093_140 0.1557698749 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
12 Hb_001689_050 0.1579598384 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
13 Hb_003175_070 0.1620045435 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
14 Hb_126933_020 0.1637620668 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
15 Hb_007765_130 0.1648832069 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
16 Hb_002942_140 0.1668938862 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
17 Hb_000594_060 0.1672097455 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
18 Hb_002498_300 0.1678498856 - - BnaC04g50140D [Brassica napus]
19 Hb_003683_030 0.1682671824 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
20 Hb_002447_050 0.1708211365 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004635_070 Hb_004635_070 Hb_150651_020 Hb_150651_020 Hb_004635_070--Hb_150651_020 Hb_001001_120 Hb_001001_120 Hb_004635_070--Hb_001001_120 Hb_001953_100 Hb_001953_100 Hb_004635_070--Hb_001953_100 Hb_007894_190 Hb_007894_190 Hb_004635_070--Hb_007894_190 Hb_000009_020 Hb_000009_020 Hb_004635_070--Hb_000009_020 Hb_050847_040 Hb_050847_040 Hb_004635_070--Hb_050847_040 Hb_150651_020--Hb_001001_120 Hb_001597_020 Hb_001597_020 Hb_150651_020--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_150651_020--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_150651_020--Hb_126933_020 Hb_150651_020--Hb_007894_190 Hb_001365_030 Hb_001365_030 Hb_001001_120--Hb_001365_030 Hb_001001_120--Hb_001597_020 Hb_002942_140 Hb_002942_140 Hb_001001_120--Hb_002942_140 Hb_003175_070 Hb_003175_070 Hb_001001_120--Hb_003175_070 Hb_001953_100--Hb_000009_020 Hb_000056_310 Hb_000056_310 Hb_001953_100--Hb_000056_310 Hb_003683_030 Hb_003683_030 Hb_001953_100--Hb_003683_030 Hb_148146_010 Hb_148146_010 Hb_001953_100--Hb_148146_010 Hb_004837_210 Hb_004837_210 Hb_001953_100--Hb_004837_210 Hb_000035_210 Hb_000035_210 Hb_001953_100--Hb_000035_210 Hb_164926_010 Hb_164926_010 Hb_007894_190--Hb_164926_010 Hb_000224_220 Hb_000224_220 Hb_007894_190--Hb_000224_220 Hb_000803_220 Hb_000803_220 Hb_007894_190--Hb_000803_220 Hb_001689_050 Hb_001689_050 Hb_007894_190--Hb_001689_050 Hb_007894_190--Hb_000009_020 Hb_000009_020--Hb_000056_310 Hb_030131_020 Hb_030131_020 Hb_000009_020--Hb_030131_020 Hb_000009_020--Hb_000035_210 Hb_000009_020--Hb_003683_030 Hb_000009_020--Hb_004837_210 Hb_004330_020 Hb_004330_020 Hb_050847_040--Hb_004330_020 Hb_001439_210 Hb_001439_210 Hb_050847_040--Hb_001439_210 Hb_004545_080 Hb_004545_080 Hb_050847_040--Hb_004545_080 Hb_001488_290 Hb_001488_290 Hb_050847_040--Hb_001488_290 Hb_000200_330 Hb_000200_330 Hb_050847_040--Hb_000200_330 Hb_003894_060 Hb_003894_060 Hb_050847_040--Hb_003894_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.220002 0.565169 2.56781 0.876359 0.447235 0.313487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.105953 0.09584 0.943446 2.02079

CAGE analysis