Hb_004635_090

Information

Type -
Description -
Location Contig4635: 64307-66166
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22800g
description POPTRDRAFT_561490; hypothetical protein
nr
ID XP_012072980.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
swissprot
ID Q9CAY1
description Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
trembl
ID A0A067KM56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06765 PE=4 SV=1
Gene Ontology
ID GO:0016554
description pentatricopeptide repeat-containing protein at3g11460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_090 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
2 Hb_000574_400 0.0987570007 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
3 Hb_002988_040 0.1101159936 - - -
4 Hb_001969_110 0.1151504319 - - PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
5 Hb_000031_170 0.1165802362 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
6 Hb_011671_410 0.1171690061 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
7 Hb_000913_020 0.1216451487 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
8 Hb_005486_030 0.1230314262 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
9 Hb_005736_020 0.1253235088 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
10 Hb_000170_130 0.12583761 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
11 Hb_000016_130 0.1260923032 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
12 Hb_012506_040 0.1300566057 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
13 Hb_006775_130 0.1319709173 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
14 Hb_004117_140 0.1323313251 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
15 Hb_005686_090 0.132513363 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
16 Hb_027346_010 0.1333479277 - - -
17 Hb_000204_120 0.1335378899 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
18 Hb_000366_040 0.1350899265 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_009486_060 0.1356318786 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
20 Hb_007508_060 0.1364280273 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]

Gene co-expression network

sample Hb_004635_090 Hb_004635_090 Hb_000574_400 Hb_000574_400 Hb_004635_090--Hb_000574_400 Hb_002988_040 Hb_002988_040 Hb_004635_090--Hb_002988_040 Hb_001969_110 Hb_001969_110 Hb_004635_090--Hb_001969_110 Hb_000031_170 Hb_000031_170 Hb_004635_090--Hb_000031_170 Hb_011671_410 Hb_011671_410 Hb_004635_090--Hb_011671_410 Hb_000913_020 Hb_000913_020 Hb_004635_090--Hb_000913_020 Hb_002234_170 Hb_002234_170 Hb_000574_400--Hb_002234_170 Hb_002783_040 Hb_002783_040 Hb_000574_400--Hb_002783_040 Hb_009486_060 Hb_009486_060 Hb_000574_400--Hb_009486_060 Hb_027346_010 Hb_027346_010 Hb_000574_400--Hb_027346_010 Hb_001205_230 Hb_001205_230 Hb_000574_400--Hb_001205_230 Hb_000574_400--Hb_011671_410 Hb_000230_500 Hb_000230_500 Hb_002988_040--Hb_000230_500 Hb_002988_040--Hb_000913_020 Hb_000497_300 Hb_000497_300 Hb_002988_040--Hb_000497_300 Hb_003020_220 Hb_003020_220 Hb_002988_040--Hb_003020_220 Hb_000041_100 Hb_000041_100 Hb_002988_040--Hb_000041_100 Hb_005686_090 Hb_005686_090 Hb_002988_040--Hb_005686_090 Hb_001969_110--Hb_000574_400 Hb_005486_030 Hb_005486_030 Hb_001969_110--Hb_005486_030 Hb_000603_110 Hb_000603_110 Hb_001969_110--Hb_000603_110 Hb_001969_110--Hb_009486_060 Hb_002316_150 Hb_002316_150 Hb_001969_110--Hb_002316_150 Hb_001268_380 Hb_001268_380 Hb_001969_110--Hb_001268_380 Hb_007416_160 Hb_007416_160 Hb_000031_170--Hb_007416_160 Hb_000031_170--Hb_005486_030 Hb_000031_170--Hb_001205_230 Hb_000046_190 Hb_000046_190 Hb_000031_170--Hb_000046_190 Hb_000031_170--Hb_000574_400 Hb_000318_390 Hb_000318_390 Hb_000031_170--Hb_000318_390 Hb_000170_130 Hb_000170_130 Hb_011671_410--Hb_000170_130 Hb_005736_020 Hb_005736_020 Hb_011671_410--Hb_005736_020 Hb_000204_120 Hb_000204_120 Hb_011671_410--Hb_000204_120 Hb_000672_040 Hb_000672_040 Hb_011671_410--Hb_000672_040 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_001999_290 Hb_001999_290 Hb_011671_410--Hb_001999_290 Hb_009780_030 Hb_009780_030 Hb_000913_020--Hb_009780_030 Hb_007508_060 Hb_007508_060 Hb_000913_020--Hb_007508_060 Hb_000913_020--Hb_000497_300 Hb_000340_230 Hb_000340_230 Hb_000913_020--Hb_000340_230 Hb_001163_100 Hb_001163_100 Hb_000913_020--Hb_001163_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7094 2.6294 0.62822 1.52177 1.55919 1.93579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10108 2.42574 2.62318 0.804803 4.22193

CAGE analysis